日期 影响因子
日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:
–

SARS-CoV-2 CoCoPUTs: analyzing GISAID and NCBI data to obtain codon statistics, mutations, and free energy over a multiyear period

SARS-CoV-2 CoCoPUTs：分析 GISAID 和 NCBI 数据，获取多年内的密码子统计数据、突变情况和自由能。

期刊:Virus Evolution
影响因子:4
doi:10.1093/ve/veae115
Padhiar, Nigam H; Ghazanchyan, Tigran; Fumagalli, Sarah E; DiCuccio, Michael; Cohen, Guy; Ginzburg, Alexander; Rikshpun, Brian; Klein, Almog; Santana-Quintero, Luis; Smith, Sean; Komar, Anton A; Kimchi-Sarfaty, Chava
SARS-CoV-2
发表日期：2025
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Uncovering codon usage patterns during murine embryogenesis and tissue-specific developmental diseases

揭示小鼠胚胎发生和组织特异性发育疾病过程中的密码子使用模式

期刊:Frontiers in Genetics
影响因子:2.8
doi:10.3389/fgene.2025.1554773
Fumagalli, Sarah E; Smith, Sean; Lin, Brian; Paul, Rahul; Campbell, Collin; Santana-Quintero, Luis; Golikov, Anton; Ibla, Juan; Bar, Haim; Komar, Anton A; Hunt, Ryan C; DiCuccio, Michael; Kimchi-Sarfaty, Chava
发育与干细胞
发表日期：2025
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Uncovering position-specific patterns in codon and codon-pair usage in candidate genes associated with blood coagulation diseases

揭示与血液凝固疾病相关的候选基因中密码子和密码子对使用的位置特异性模式

期刊:NAR Genomics and Bioinformatics
影响因子:2.8
doi:10.1093/nargab/lqaf169
Clement, Nathan J; Hamasaki-Katagiri, Nobuko; Lin, Brian; Komar, Anton A; DiCuccio, Michael; Bar, Haim; Kimchi-Sarfaty, Chava
发表日期：2025
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RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes

宏基因组时代下的RefSeq和原核生物基因组注释流程

期刊:Nucleic Acids Research
影响因子:13.1
doi:10.1093/nar/gkad988
Haft, Daniel H; Badretdin, Azat; Coulouris, George; DiCuccio, Michael; Durkin, A Scott; Jovenitti, Eric; Li, Wenjun; Mersha, Megdelawit; O'Neill, Kathleen R; Virothaisakun, Joel; Thibaud-Nissen, Françoise
发表日期：2024
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Mouse embryo CoCoPUTs: novel murine transcriptomic-weighted usage website featuring multiple strains, tissues, and stages

小鼠胚胎CoCoPUTs：一个新型的小鼠转录组加权使用网站，涵盖多种品系、组织和发育阶段。

期刊:BMC Bioinformatics
影响因子:3.3
doi:10.1186/s12859-024-05906-3
Fumagalli, Sarah E; Smith, Sean; Ghazanchyan, Tigran; Meyer, Douglas; Paul, Rahul; Campbell, Collin; Santana-Quintero, Luis; Golikov, Anton; Ibla, Juan; Bar, Haim; Komar, Anton A; Hunt, Ryan C; Lin, Brian; DiCuccio, Michael; Kimchi-Sarfaty, Chava
发育与干细胞
Mouse
发表日期：2024
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Collection and curation of prokaryotic genome assemblies from type strains at NCBI

NCBI负责收集和整理来自模式菌株的原核生物基因组组装数据。

期刊:International Journal of Systematic and Evolutionary Microbiology
影响因子:2
doi:10.1099/ijsem.0.005707
Kannan, Sivakumar; Sharma, Shobha; Ciufo, Stacy; Clark, Karen; Turner, Seán; Kitts, Paul A; Schoch, Conrad L; DiCuccio, Michael; Kimchi, Avi
发表日期：2023
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Protocol to identify host-viral protein interactions between coagulation-related proteins and their genetic variants with SARS-CoV-2 proteins

用于鉴定凝血相关蛋白及其基因变体与SARS-CoV-2蛋白之间宿主-病毒蛋白相互作用的方案

期刊:STAR Protocols
影响因子:1.3
doi:10.1016/j.xpro.2022.101648
Holcomb, David D; Jankowska, Katarzyna I; Hernandez, Nancy; Laurie, Kyle; Kames, Jacob; Hamasaki-Katagiri, Nobuko; Komar, Anton A; DiCuccio, Michael; Kimchi-Sarfaty, Chava
微生物学
SARS-CoV-2
发表日期：2022
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RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach with protein family model curation

RefSeq：利用蛋白质家族模型注释扩展原核生物基因组注释流程的范围

期刊:Nucleic Acids Research
影响因子:13.1
doi:10.1093/nar/gkaa1105
Li, Wenjun; O'Neill, Kathleen R; Haft, Daniel H; DiCuccio, Michael; Chetvernin, Vyacheslav; Badretdin, Azat; Coulouris, George; Chitsaz, Farideh; Derbyshire, Myra K; Durkin, A Scott; Gonzales, Noreen R; Gwadz, Marc; Lanczycki, Christopher J; Song, James S; Thanki, Narmada; Wang, Jiyao; Yamashita, Roxanne A; Yang, Mingzhang; Zheng, Chanjuan; Marchler-Bauer, Aron; Thibaud-Nissen, Françoise
发表日期：2021
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Distinct signatures of codon and codon pair usage in 32 primary tumor types in the novel database CancerCoCoPUTs for cancer-specific codon usage

新型癌症特异性密码子使用数据库 CancerCoCoPUTs 中 32 种原发性肿瘤类型密码子和密码子对使用的独特特征

期刊:Genome Medicine
影响因子:11.2
doi:10.1186/s13073-021-00935-6
Meyer, Douglas; Kames, Jacob; Bar, Haim; Komar, Anton A; Alexaki, Aikaterini; Ibla, Juan; Hunt, Ryan C; Santana-Quintero, Luis V; Golikov, Anton; DiCuccio, Michael; Kimchi-Sarfaty, Chava
肿瘤
肿瘤免疫
发表日期：2021
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In Silico Evaluation of Cyclophilin Inhibitors as Potential Treatment for SARS-CoV-2

利用计算机模拟评估环孢素抑制剂作为SARS-CoV-2潜在治疗方法的疗效

期刊:Open Forum Infectious Diseases
影响因子:3.8
doi:10.1093/ofid/ofab189
Laurie, Kyle; Holcomb, David; Kames, Jacob; Komar, Anton A; DiCuccio, Michael; Ibla, Juan C; Kimchi-Sarfaty, Chava
SARS-CoV-2
发表日期：2021
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