日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Predicting epistasis across proteins by structural logic

利用结构逻辑预测蛋白质间的上位性

Tang, Michelle; Cromie, Gareth A; Kabir, Anowarul; Timour, Martin S; Ashmead, Julee; Lo, Russell S; Corley, Nathaniel; DiMaio, Frank; Morizono, Hiroki; Caldovic, Ljubica; Ah Mew, Nicholas; Gropman, Andrea; Shehu, Amarda; Dudley, Aimée M

Using experimental results of protein design to guide biomolecular energy-function development

利用蛋白质设计的实验结果指导生物分子能量功能开发

Haddox, Hugh K; Rocklin, Gabriel J; Motta, Francis C; Strickland, Devin; Halabiya, Samer F; Cordray, Cameron; Park, Hahnbeom; Klavins, Eric; Baker, David; DiMaio, Frank

RNA-Puzzles Round V: blind predictions of 23 RNA structures

RNA谜题第五轮:23种RNA结构的盲预测

Bu, Fan; Adam, Yagoub; Adamiak, Ryszard W; Antczak, Maciej; de Aquino, Belisa Rebeca H; Badepally, Nagendar Goud; Batey, Robert T; Baulin, Eugene F; Boinski, Pawel; Boniecki, Michal J; Bujnicki, Janusz M; Carpenter, Kristy A; Chacon, Jose; Chen, Shi-Jie; Chiu, Wah; Cordero, Pablo; Das, Naba Krishna; Das, Rhiju; Dawson, Wayne K; DiMaio, Frank; Ding, Feng; Dock-Bregeon, Anne-Catherine; Dokholyan, Nikolay V; Dror, Ron O; Dunin-Horkawicz, Stanisław; Eismann, Stephan; Ennifar, Eric; Esmaeeli, Reza; Farsani, Masoud Amiri; Ferré-D'Amaré, Adrian R; Geniesse, Caleb; Ghanim, George E; Guzman, Horacio V; Hood, Iris V; Huang, Lin; Jain, Dharm Skandh; Jaryani, Farhang; Jin, Lei; Joshi, Astha; Karelina, Masha; Kieft, Jeffrey S; Kladwang, Wipapat; Kmiecik, Sebastian; Koirala, Deepak; Kollmann, Markus; Kretsch, Rachael C; Kurciński, Mateusz; Li, Jun; Li, Shuang; Magnus, Marcin; Masquida, BenoÎt; Moafinejad, S Naeim; Mondal, Arup; Mukherjee, Sunandan; Nguyen, Thi Hoang Duong; Nikolaev, Grigory; Nithin, Chandran; Nye, Grace; Pandaranadar Jeyeram, Iswarya P N; Perez, Alberto; Pham, Phillip; Piccirilli, Joseph A; Pilla, Smita Priyadarshini; Pluta, Radosław; Poblete, Simón; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Popenda, Lukasz; Pucci, Fabrizio; Rangan, Ramya; Ray, Angana; Ren, Aiming; Sarzynska, Joanna; Sha, Congzhou Mike; Stefaniak, Filip; Su, Zhaoming; Suddala, Krishna C; Szachniuk, Marta; Townshend, Raphael; Trachman, Robert J 3rd; Wang, Jian; Wang, Wenkai; Watkins, Andrew; Wirecki, Tomasz K; Xiao, Yi; Xiong, Peng; Xiong, Yiduo; Yang, Jianyi; Yesselman, Joseph David; Zhang, Jinwei; Zhang, Yi; Zhang, Zhenzhen; Zhou, Yuanzhe; Zok, Tomasz; Zhang, Dong; Zhang, Sicheng; Żyła, Adriana; Westhof, Eric; Miao, Zhichao

Accurate de novo design of high-affinity protein-binding macrocycles using deep learning

利用深度学习进行高亲和力蛋白质结合大环化合物的精确从头设计

Rettie, Stephen A; Juergens, David; Adebomi, Victor; Bueso, Yensi Flores; Zhao, Qinqin; Leveille, Alexandria N; Liu, Andi; Bera, Asim K; Wilms, Joana A; Üffing, Alina; Kang, Alex; Brackenbrough, Evans; Lamb, Mila; Gerben, Stacey R; Murray, Analisa; Levine, Paul M; Schneider, Maika; Vasireddy, Vibha; Ovchinnikov, Sergey; Weiergräber, Oliver H; Willbold, Dieter; Kritzer, Joshua A; Mougous, Joseph D; Baker, David; DiMaio, Frank; Bhardwaj, Gaurav

Computational design of sequence-specific DNA-binding proteins

序列特异性DNA结合蛋白的计算设计

Glasscock, Cameron J; Pecoraro, Robert J; McHugh, Ryan; Doyle, Lindsey A; Chen, Wei; Boivin, Olivier; Lonnquist, Beau; Na, Emily; Politanska, Yuliya; Haddox, Hugh K; Cox, David; Norn, Christoffer; Coventry, Brian; Goreshnik, Inna; Vafeados, Dionne; Lee, Gyu Rie; Gordân, Raluca; Stoddard, Barry L; DiMaio, Frank; Baker, David

Modeling protein-small molecule conformational ensembles with PLACER

利用PLACER对蛋白质-小分子构象集合进行建模

Anishchenko, Ivan; Kipnis, Yakov; Kalvet, Indrek; Zhou, Guangfeng; Krishna, Rohith; Pellock, Samuel J; Lauko, Anna; Lee, Gyu Rie; An, Linna; Dauparas, Justas; DiMaio, Frank; Baker, David

De novo design of phospho-tyrosine peptide binders

从头设计磷酸酪氨酸肽结合剂

Bauer, Magnus S; Zhang, Jason Z; Wu, Kejia; Lee, Gyu Rie; Coventry, Brian; Klupt, Kody A; Shi, Jiuhan; Brent, Rafael I; Li, Xinting; Moller, Carolina; Roullier, Nicole; Vafeados, Dionne K; Kalvet, Indrek; Skotheim, Rebecca K; Zhu, Siyu; Motmaen, Amir; Herrmann, Luca C; Sturmfels, Pascal; Tischer, Doug; Altae-Tran, Han Raut; Juergens, David; Krishna, Rohith; Ahern, Woody; Yim, Jason; Bera, Asim K; Kang, Alex; Joyce, Emily; Lu, Andrew; Stewart, Lance; DiMaio, Frank; Baker, David

De novo Design of All-atom Biomolecular Interactions with RFdiffusion3

利用 RFdiffusion3 从头设计全原子生物分子相互作用

Butcher, Jasper; Krishna, Rohith; Mitra, Raktim; Brent, Rafael I; Li, Yanjing; Corley, Nathaniel; Kim, Paul; Funk, Jonathan; Mathis, Simon; Salike, Saman; Muraishi, Aiko; Eisenach, Helen; Thompson, Tuscan Rock; Chen, Jie; Politanska, Yuliya; Sehgal, Enisha; Coventry, Brian; Zhang, Odin; Qiang, Bo; Didi, Kieran; Kazman, Max; DiMaio, Frank; Baker, David

De novo design of RNA and nucleoprotein complexes

从头设计RNA和核蛋白复合物

Favor, Andrew; Quijano, Riley; Chernova, Elizaveta; Kubaney, Andrew; Weidle, Connor; Esler, Morgan A; McHugh, Lilian; Carr, Ann; Hsia, Yang; Juergens, David; Carr, Kenneth D; Kim, Paul T; Politanska, Yuliya; Sehgal, Enisha; Kwon, Paul S; Pecoraro, Robert J; Glasscock, Cameron; Borst, Andrew J; DiMaio, Frank; Stoddard, Barry L; Baker, David

Accelerating Biomolecular Modeling with AtomWorks and RF3

利用 AtomWorks 和 RF3 加速生物分子建模

Corley, Nathaniel; Mathis, Simon; Krishna, Rohith; Bauer, Magnus S; Thompson, Tuscan R; Ahern, Woody; Kazman, Maxwell W; Brent, Rafael I; Didi, Kieran; Kubaney, Andrew; McHugh, Lilian; Nagle, Arnav; Favor, Andrew; Kshirsagar, Meghana; Sturmfels, Pascal; Li, Yanjing; Butcher, Jasper; Qiang, Bo; Schaaf, Lars L; Mitra, Raktim; Campbell, Katelyn; Zhang, Odin; Weissman, Roni; Humphreys, Ian R; Cong, Qian; Funk, Jonathan; Sonthalia, Shreyash; Liò, Pietro; Baker, David; DiMaio, Frank