Ding Hongxu相关文献与解析，生知库 | 链接生命科学的每一步

日期影响因子

A reference-guided iterative approach to polish the nanopore sequencing basecalling for therapeutic RNA quality control

一种基于参考序列的迭代方法来优化纳米孔测序碱基识别，以用于治疗性RNA质量控制

期刊:Communications Biology

影响因子:5.1

doi:10.1038/s42003-025-08811-4

Wang, Ziyuan; Tu, Mei-Juan; Liu, Ziyang; Wang, Katherine K; Fang, Yinshan; Hao, Ning; Zhang, Hao Helen; Que, Jianwen; Sun, Xiaoxiao; Yu, Ai-Ming; Ding, Hongxu

发表日期：2025

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Adapting nanopore sequencing basecalling models for modification detection via incremental learning and anomaly detection

通过增量学习和异常检测，将纳米孔测序碱基识别模型应用于修饰检测

期刊:Nature Communications

影响因子:15.7

doi:10.1038/s41467-024-51639-5

Wang, Ziyuan; Fang, Yinshan; Liu, Ziyang; Hao, Ning; Zhang, Hao Helen; Sun, Xiaoxiao; Que, Jianwen; Ding, Hongxu

发表日期：2024

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Single-cell signatures identify microenvironment factors in tumors associated with patient outcomes

单细胞特征可识别肿瘤微环境因素，这些因素与患者预后相关。

期刊:Cell Reports Methods

影响因子:4.5

doi:10.1016/j.crmeth.2024.100799

Xue, Yuanqing; Friedl, Verena; Ding, Hongxu; Wong, Christopher K; Stuart, Joshua M

细胞生物学

肿瘤微环境

发表日期：2024

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The manatee variational autoencoder model for predicting gene expression alterations caused by transcription factor perturbations

海牛变分自编码器模型用于预测转录因子扰动引起的基因表达改变

期刊:Scientific Reports

影响因子:3.9

doi:10.1038/s41598-024-62620-z

Yang, Ying; Seninge, Lucas; Wang, Ziyuan; Oro, Anthony; Stuart, Joshua M; Ding, Hongxu

发表日期：2024

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Training Data Diversity Enhances the Basecalling of Novel RNA Modification-Induced Nanopore Sequencing Readouts

训练数据多样性增强了新型RNA修饰诱导纳米孔测序读数的碱基识别。

doi:10.1101/2024.08.29.610342

Wang, Ziyuan; Liu, Ziyang; Fang, Yinshan; Zhang, Hao Helen; Sun, Xiaoxiao; Hao, Ning; Que, Jianwen; Ding, Hongxu

发表日期：2024

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General Capillary Endothelial Cells Undergo Reprogramming into Arterial Endothelial Cells in Pulmonary Hypertension through HIF-2α/Notch4 Pathway

在肺动脉高压中，毛细血管内皮细胞通过HIF-2α/Notch4通路重编程为动脉内皮细胞。

doi:10.1101/2024.02.13.580227

Liu, Bin; Yi, Dan; Xia, Xiaomei; Ramirez, Karina; Zhao, Hanqiu; Cao, Yanhong; Tripathi, Ankit; Dong, Ryan; Gao, Anton; Ding, Hongxu; Qiu, Shenfeng; Kalinichenko, Vladimir V; Fallon, Michael B; Dai, Zhiyu

肺动脉高压

细胞生物学

发表日期：2024

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An Iterative Approach to Polish the Nanopore Sequencing Basecalling for Therapeutic RNA Quality Control

一种用于优化纳米孔测序碱基识别以提升治疗性RNA质量控制的迭代方法

doi:10.1101/2024.09.12.612711

Wang, Ziyuan; Tu, Mei-Juan; Liu, Ziyang; Wang, Katherine K; Fang, Yinshan; Hao, Ning; Zhang, Hao Helen; Que, Jianwen; Sun, Xiaoxiao; Yu, Ai-Ming; Ding, Hongxu

发表日期：2024

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The Precise Basecalling of Short-Read Nanopore Sequencing

短读长纳米孔测序的精确碱基识别

doi:10.1101/2024.09.12.612746

Wang, Ziyuan; Tu, Mei-Juan; Song, Chengcheng; Liu, Ziyang; Wang, Katherine K; Chen, Shuibing; Yu, Ai-Ming; Ding, Hongxu

发表日期：2024

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General Capillary Endothelial Cells Undergo Reprogramming Into Arterial Endothelial Cells in Pulmonary Hypertension Through HIF-2α/Notch4 Pathway

在肺动脉高压中，毛细血管内皮细胞通过HIF-2α/Notch4通路重编程为动脉内皮细胞。

期刊:Circulation

doi:10.1161/CIRCULATIONAHA.123.067981

Liu, Bin; Yi, Dan; Xia, Xiaomei; Ramirez, Karina; Zhao, Hanqiu; Cao, Yanhong; Tripathi, Ankit; Dong, Ryan; Gao, Anton; Ding, Hongxu; Qiu, Shenfeng; Kalinichenko, Vladimir V; Zhao, You-Yang; Fallon, Michael B; Dai, Zhiyu

肺动脉高压

细胞生物学

发表日期：2024

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Adapting Nanopore Sequencing Basecalling Models for Modification Detection via Incremental Learning and Anomaly Detection

通过增量学习和异常检测改进纳米孔测序碱基识别模型以进行修饰检测

doi:10.1101/2023.12.19.572449

Wang, Ziyuan; Fang, Yinshan; Liu, Ziyang; Hao, Ning; Zhang, Hao Helen; Sun, Xiaoxiao; Que, Jianwen; Ding, Hongxu

发表日期：2023

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