日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Author Correction: MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication

作者更正:MaizeCODE揭示了双向表达的增强子,这些增强子含有玉米驯化的分子特征

Cahn, Jonathan; Regulski, Michael; Lynn, Jason; Ernst, Evan; de Santis Alves, Cristiane; Ramakrishnan, Srividya; Chougule, Kapeel; Wei, Sharon; Lu, Zhenyuan; Xu, Xiaosa; Ramu, Umamaheswari; Drenkow, Jorg; Danyko, Cassidy; Kramer, Melissa; Seetharam, Arun; Hufford, Matthew B; McCombie, W Richard; Ware, Doreen; Jackson, David; Schatz, Michael C; Gingeras, Thomas R; Martienssen, Robert A

MaizeCODE reveals bi-directionally expressed enhancers that harbor molecular signatures of maize domestication

MaizeCODE 揭示双向表达的增强子,其中含有玉米驯化的分子特征

Jonathan Cahn, Michael Regulski, Jason Lynn, Evan Ernst, Cristiane de Santis Alves, Srividya Ramakrishnan, Kapeel Chougule, Sharon Wei, Zhenyuan Lu, Xiaosa Xu, Umamaheswari Ramu, Jorg Drenkow, Melissa Kramer, Arun Seetharam, Matthew B Hufford, W Richard McCombie, Doreen Ware, David Jackson, Michael

High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436

两个重要的高粱自交系Tx2783和RTx436的高质量染色体尺度基因组组装

Bo Wang,Kapeel Chougule,Yinping Jiao,Andrew Olson,Vivek Kumar,Nicholas Gladman,Jian Huang,Victor Llaca,Kevin Fengler,Xuehong Wei,Liya Wang,Xiaofei Wang,Michael Regulski,Jorg Drenkow,Thomas Gingeras,Chad Hayes,J Scott Armstrong,Yinghua Huang,Zhanguo Xin,Doreen Ware

The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

EN-TEx资源库包含多组织个体表观基因组和变异影响模型

Rozowsky, Joel; Gao, Jiahao; Borsari, Beatrice; Yang, Yucheng T; Galeev, Timur; Gürsoy, Gamze; Epstein, Charles B; Xiong, Kun; Xu, Jinrui; Li, Tianxiao; Liu, Jason; Yu, Keyang; Berthel, Ana; Chen, Zhanlin; Navarro, Fabio; Sun, Maxwell S; Wright, James; Chang, Justin; Cameron, Christopher J F; Shoresh, Noam; Gaskell, Elizabeth; Drenkow, Jorg; Adrian, Jessika; Aganezov, Sergey; Aguet, François; Balderrama-Gutierrez, Gabriela; Banskota, Samridhi; Corona, Guillermo Barreto; Chee, Sora; Chhetri, Surya B; Cortez Martins, Gabriel Conte; Danyko, Cassidy; Davis, Carrie A; Farid, Daniel; Farrell, Nina P; Gabdank, Idan; Gofin, Yoel; Gorkin, David U; Gu, Mengting; Hecht, Vivian; Hitz, Benjamin C; Issner, Robbyn; Jiang, Yunzhe; Kirsche, Melanie; Kong, Xiangmeng; Lam, Bonita R; Li, Shantao; Li, Bian; Li, Xiqi; Lin, Khine Zin; Luo, Ruibang; Mackiewicz, Mark; Meng, Ran; Moore, Jill E; Mudge, Jonathan; Nelson, Nicholas; Nusbaum, Chad; Popov, Ioann; Pratt, Henry E; Qiu, Yunjiang; Ramakrishnan, Srividya; Raymond, Joe; Salichos, Leonidas; Scavelli, Alexandra; Schreiber, Jacob M; Sedlazeck, Fritz J; See, Lei Hoon; Sherman, Rachel M; Shi, Xu; Shi, Minyi; Sloan, Cricket Alicia; Strattan, J Seth; Tan, Zhen; Tanaka, Forrest Y; Vlasova, Anna; Wang, Jun; Werner, Jonathan; Williams, Brian; Xu, Min; Yan, Chengfei; Yu, Lu; Zaleski, Christopher; Zhang, Jing; Ardlie, Kristin; Cherry, J Michael; Mendenhall, Eric M; Noble, William S; Weng, Zhiping; Levine, Morgan E; Dobin, Alexander; Wold, Barbara; Mortazavi, Ali; Ren, Bing; Gillis, Jesse; Myers, Richard M; Snyder, Michael P; Choudhary, Jyoti; Milosavljevic, Aleksandar; Schatz, Michael C; Bernstein, Bradley E; Guigó, Roderic; Gingeras, Thomas R; Gerstein, Mark

A framework for rigorous evaluation of human performance in human and machine learning comparison studies

用于严格评估人类在人类与机器学习对比研究中表现的框架

Cowley, Hannah P; Natter, Mandy; Gray-Roncal, Karla; Rhodes, Rebecca E; Johnson, Erik C; Drenkow, Nathan; Shead, Timothy M; Chance, Frances S; Wester, Brock; Gray-Roncal, William

Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery

对发育中的玉米穗进行单细胞RNA测序,有助于功能分析和性状候选基因的发现。

Xiaosa Xu ,Megan Crow ,Brian R Rice ,Forrest Li ,Benjamin Harris ,Lei Liu ,Edgar Demesa-Arevalo ,Zefu Lu ,Liya Wang ,Nathan Fox ,Xiaofei Wang ,Jorg Drenkow ,Anding Luo ,Si Nian Char ,Bing Yang ,Anne W Sylvester ,Thomas R Gingeras ,Robert J Schmitz ,Doreen Ware ,Alexander E Lipka ,Jesse Gillis ,David Jackson

A limited set of transcriptional programs define major cell types

一组有限的转录程序决定了主要的细胞类型

Alessandra Breschi #, Manuel Muñoz-Aguirre #, Valentin Wucher #, Carrie A Davis, Diego Garrido-Martín, Sarah Djebali, Jesse Gillis, Dmitri D Pervouchine, Anna Vlasova, Alexander Dobin, Chris Zaleski, Jorg Drenkow, Cassidy Danyko, Alexandra Scavelli, Ferran Reverter, Michael P Snyder, Thomas R Ginger

Toward a scalable framework for reproducible processing of volumetric, nanoscale neuroimaging datasets

构建可扩展的框架,用于可重复处理体积纳米级神经影像数据集

Johnson, Erik C; Wilt, Miller; Rodriguez, Luis M; Norman-Tenazas, Raphael; Rivera, Corban; Drenkow, Nathan; Kleissas, Dean; LaGrow, Theodore J; Cowley, Hannah P; Downs, Joseph; K Matelsky, Jordan; J Hughes, Marisa; P Reilly, Elizabeth; A Wester, Brock; L Dyer, Eva; P Kording, Konrad; R Gray-Roncal, William

Dynamics of microRNA expression during mouse prenatal development

小鼠产前发育过程中 microRNA 表达的动态

Sorena Rahmanian #, Rabi Murad #, Alessandra Breschi, Weihua Zeng, Mark Mackiewicz, Brian Williams, Carrie A Davis, Brian Roberts, Sarah Meadows, Dianna Moore, Diane Trout, Chris Zaleski, Alex Dobin, Lei-Hoon Sei, Jorg Drenkow, Alex Scavelli, Thomas R Gingeras, Barbara J Wold, Richard M Myers, Roder

Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

来自多种小鼠组织的增强型转录组图谱揭示了基因表达的进化限制

Pervouchine, Dmitri D; Djebali, Sarah; Breschi, Alessandra; Davis, Carrie A; Barja, Pablo Prieto; Dobin, Alex; Tanzer, Andrea; Lagarde, Julien; Zaleski, Chris; See, Lei-Hoon; Fastuca, Meagan; Drenkow, Jorg; Wang, Huaien; Bussotti, Giovanni; Pei, Baikang; Balasubramanian, Suganthi; Monlong, Jean; Harmanci, Arif; Gerstein, Mark; Beer, Michael A; Notredame, Cedric; Guigó, Roderic; Gingeras, Thomas R