日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Separating selection from mutation in antibody language models

在抗体语言模型中区分选择和突变

Matsen, Frederick A 4th; Dumm, Will; Sung, Kevin; Johnson, Mackenzie M; Rich, David H; Starr, Tyler N; Song, Yun S; Fukuyama, Julia; Haddox, Hugh K

Clonal interference and changing selective pressures shape the escape of SARS-CoV-2 from hundreds of antibodies

克隆干扰和不断变化的选择压力影响着SARS-CoV-2病毒逃避数百种抗体的能力

Haddox, Hugh K; Abdel Aziz, Omar; Galloway, Jared G; Kent, Javen; Cooper, Cameron R; Jennings-Shaffer, Chris; Dumm, Will; Temple, Seth D; Bloom, Jesse D; Matsen, Frederick A 4th

Thrifty wide-context models of B cell receptor somatic hypermutation

B细胞受体体细胞高频突变的节俭型广义模型

Sung, Kevin; Johnson, Mackenzie M; Dumm, Will; Simon, Noah; Haddox, Hugh; Fukuyama, Julia; Matsen, Frederick A

A Sitewise Model of Natural Selection on Individual Antibodies via a Transformer-Encoder

基于Transformer编码器的单抗体自然选择位点模型

Matsen, Frederick A 4th; Sung, Kevin; Johnson, Mackenzie M; Dumm, Will; Rich, David; Starr, Tyler N; Song, Yun S; Bradley, Philip; Fukuyama, Julia; Haddox, Hugh K

Leveraging DAGs to improve context-sensitive and abundance-aware tree estimation

利用有向无环图改进上下文相关和丰度感知的树木估计

Dumm, Will; Ralph, Duncan; DeWitt, William; Vora, Ashni; Araki, Tatsuya; Victora, Gabriel D; Matsen Iv, Frederick A

larch: mapping the parsimony-optimal landscape of trees for directed exploration

落叶松:绘制树木简约最优景观图以进行定向探索

Barker, Mary; Milanov, Ognian; Dumm, Will; Rich, Dave; Turakhia, Yatish; Matsen, Frederick A 4th

Separating selection from mutation in antibody language models

在抗体语言模型中区分选择和突变

Matsen, Frederick A 4th; Dumm, Will; Sung, Kevin; Johnson, Mackenzie M; Rich, David; Starr, Tyler; Song, Yun S; Fukuyama, Julia; Haddox, Hugh K

The Structure of Deviations From Maximum Parsimony for Densely-Sampled Data and Applications for Clade Support Estimation

密集采样数据的最大简约性偏差结构及其在谱系支持度估计中的应用

Howard-Snyder, William; Dumm, Will; Barker, Mary; Milanov, Ognian; Winston, Claris; Rich, David H; Suchard, Marc A; Matsen, Frederick A

Replaying germinal center evolution on a quantified affinity landscape.

在量化的亲和力景观上重现胚胎中心演化

DeWitt William S, Vora Ashni A, Araki Tatsuya, Galloway Jared G, Alkutkar Tanwee, Bortolatto Juliana, Castro Tiago B R, Dumm Will, Jennings-Shaffer Chris, Jia Tongqiu, Mesin Luka, Ozorowski Gabriel, Pae Juhee, Ralph Duncan K, Bloom Jesse D, Nourmohammad Armita, Song Yun S, Ward Andrew B, Starr Tyler N, Matsen Frederick A 4th, Victora Gabriel D

Representing and extending ensembles of parsimonious evolutionary histories with a directed acyclic graph

用有向无环图表示和扩展简约演化历史集合

Dumm, Will; Barker, Mary; Howard-Snyder, William; DeWitt Iii, William S; Matsen Iv, Frederick A