文献库，生知库 | 链接生命科学的每一步

日期影响因子

PATHOS: Pathology attention framework for treatment response stratification in ovarian high-grade serous carcinomas following neoadjuvant chemotherapy on H&E images

PATHOS：基于H&E图像的新辅助化疗后卵巢高级别浆液性癌治疗反应分层的病理关注框架

期刊:Journal of Pathology Informatics

doi:10.1016/j.jpi.2026.100545

Miccolis, Francesca; Lovino, Marta; Lehtonen, Oskari; Hynninen, Johanna; Hautaniemi, Sampsa; Virtanen, Anni; Ficarra, Elisa

发表日期：2026

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Integrated microRNA and proteome analysis of cancer datasets with MoPC

利用MoPC对癌症数据集进行microRNA和蛋白质组整合分析

期刊:PLoS One

影响因子:2.6

doi:10.1371/journal.pone.0289699

Lovino, Marta; Ficarra, Elisa; Martignetti, Loredana

发表日期：2024

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MiREx: mRNA levels prediction from gene sequence and miRNA target knowledge

MiREx：基于基因序列和miRNA靶标知识预测mRNA水平

期刊:BMC Bioinformatics

影响因子:3.3

doi:10.1186/s12859-023-05560-1

Pianfetti, Elena; Lovino, Marta; Ficarra, Elisa; Martignetti, Loredana

发表日期：2023

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LaRA 2: parallel and vectorized program for sequence-structure alignment of RNA sequences

LaRA 2：用于RNA序列结构比对的并行向量化程序

期刊:BMC Bioinformatics

影响因子:3.3

doi:10.1186/s12859-021-04532-7

Winkler, Jörg; Urgese, Gianvito; Ficarra, Elisa; Reinert, Knut

发表日期：2022

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Exploiting generative self-supervised learning for the assessment of biological images with lack of annotations

利用生成式自监督学习评估缺乏标注的生物图像

期刊:BMC Bioinformatics

影响因子:3.3

doi:10.1186/s12859-022-04845-1

Mascolini, Alessio; Cardamone, Dario; Ponzio, Francesco; Di Cataldo, Santa; Ficarra, Elisa

发表日期：2022

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PhyliCS: a Python library to explore scCNA data and quantify spatial tumor heterogeneity

PhyliCS：一个用于探索scCNA数据并量化肿瘤空间异质性的Python库

期刊:BMC Bioinformatics

影响因子:3.3

doi:10.1186/s12859-021-04277-3

Montemurro, Marilisa; Grassi, Elena; Pizzino, Carmelo Gabriele; Bertotti, Andrea; Ficarra, Elisa; Urgese, Gianvito

发表日期：2021

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Cytoarchitectural analysis of the neuron-to-glia association in the dorsal root ganglia of normal and diabetic mice.

正常小鼠和糖尿病小鼠背根神经节中神经元与胶质细胞关联的细胞结构分析

期刊:Journal of Anatomy

影响因子:1.9

doi:10.1111/joa.13252

Ciglieri Elisa, Vacca Maurizia, Ferrini Francesco, Atteya Mona A, Aimar Patrizia, Ficarra Elisa, Di Cataldo Santa, Merighi Adalberto, Salio Chiara

发表日期：2020

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Unification of miRNA and isomiR research: the mirGFF3 format and the mirtop API

miRNA 和 isomiR 研究的统一：mirGFF3 格式和 mirtop API

doi:10.1093/bioinformatics/btz675

Desvignes, Thomas; Loher, Phillipe; Eilbeck, Karen; Ma, Jeffery; Urgese, Gianvito; Fromm, Bastian; Sydes, Jason; Aparicio-Puerta, Ernesto; Barrera, Victor; Espín, Roderic; Thibord, Florian; Bofill-De Ros, Xavier; Londin, Eric; Telonis, Aristeidis G; Ficarra, Elisa; Friedländer, Marc R; Postlethwait, John H; Rigoutsos, Isidore; Hackenberg, Michael; Vlachos, Ioannis S; Halushka, Marc K; Pantano, Lorena

发表日期：2020

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BioSeqZip: a collapser of NGS redundant reads for the optimization of sequence analysis

BioSeqZip：一种用于优化序列分析的NGS冗余读段合并工具

doi:10.1093/bioinformatics/btaa051

Urgese, Gianvito; Parisi, Emanuele; Scicolone, Orazio; Di Cataldo, Santa; Ficarra, Elisa

发表日期：2020

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DEEPrior: a deep learning tool for the prioritization of gene fusions

DEEPrior：一种用于基因融合优先级排序的深度学习工具

doi:10.1093/bioinformatics/btaa069

Lovino, Marta; Ciaburri, Maria Serena; Urgese, Gianvito; Di Cataldo, Santa; Ficarra, Elisa

发表日期：2020

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