日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation

LOMETS3:整合深度学习和序列比对,实现高级蛋白质模板识别和功能注释

Zheng, Wei; Wuyun, Qiqige; Zhou, Xiaogen; Li, Yang; Freddolino, Peter L; Zhang, Yang

TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction

TripletGO:整合转录表达谱与蛋白质同源性推断进行基因功能预测

Zhu, Yi-Heng; Zhang, Chengxin; Liu, Yan; Omenn, Gilbert S; Freddolino, Peter L; Yu, Dong-Jun; Zhang, Yang

Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study

利用整合数据挖掘方法揭示sRNA的转录调控因子和靶标:以H-NS调控的RseX为例

Mihailovic, Mia K; Ekdahl, Alyssa M; Chen, Angela; Leistra, Abigail N; Li, Bridget; González Martínez, Javier; Law, Matthew; Ejindu, Cindy; Massé, Éric; Freddolino, Peter L; Contreras, Lydia M

Functions of Essential Genes and a Scale-Free Protein Interaction Network Revealed by Structure-Based Function and Interaction Prediction for a Minimal Genome

基于结构的最小基因组功能和相互作用预测揭示了必需基因的功能和无标度蛋白质相互作用网络

Zhang, Chengxin; Zheng, Wei; Cheng, Micah; Omenn, Gilbert S; Freddolino, Peter L; Zhang, Yang

A Well-Mixed E. coli Genome: Widespread Contacts Revealed by Tracking Mu Transposition.

大肠杆菌基因组混合均匀:通过追踪 Mu 转座揭示广泛的接触

Walker David M, Freddolino Peter L, Harshey Rasika M

Principles of mRNA control by human PUM proteins elucidated from multimodal experiments and integrative data analysis

通过多模式实验和整合数据分析阐明人类PUM蛋白调控mRNA的原理

Wolfe, Michael B; Schagat, Trista L; Paulsen, Michelle T; Magnuson, Brian; Ljungman, Mats; Park, Daeyoon; Zhang, Chi; Campbell, Zachary T; Goldstrohm, Aaron C; Freddolino, Peter L

Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons

利用分类群特异性比率比较检测基因本体错误注释

Wei, Xiaoqiong; Zhang, Chengxin; Freddolino, Peter L; Zhang, Yang

Rapid metabolic shifts occur during the transition between hunger and satiety in Drosophila melanogaster

在果蝇(Drosophila melanogaster)中,饥饿和饱腹状态转变期间会发生快速的代谢变化。

Wilinski, Daniel; Winzeler, Jasmine; Duren, William; Persons, Jenna L; Holme, Kristina J; Mosquera, Johan; Khabiri, Morteza; Kinchen, Jason M; Freddolino, Peter L; Karnovsky, Alla; Dus, Monica

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

CAFA挑战赛报告称,通过实验筛选,改进了数百个基因的蛋白质功能预测,并提出了新的功能注释。

Zhou, Naihui; Jiang, Yuxiang; Bergquist, Timothy R; Lee, Alexandra J; Kacsoh, Balint Z; Crocker, Alex W; Lewis, Kimberley A; Georghiou, George; Nguyen, Huy N; Hamid, Md Nafiz; Davis, Larry; Dogan, Tunca; Atalay, Volkan; Rifaioglu, Ahmet S; Dalkıran, Alperen; Cetin Atalay, Rengul; Zhang, Chengxin; Hurto, Rebecca L; Freddolino, Peter L; Zhang, Yang; Bhat, Prajwal; Supek, Fran; Fernández, José M; Gemovic, Branislava; Perovic, Vladimir R; Davidović, Radoslav S; Sumonja, Neven; Veljkovic, Nevena; Asgari, Ehsaneddin; Mofrad, Mohammad R K; Profiti, Giuseppe; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Boecker, Florian; Schoof, Heiko; Kahanda, Indika; Thurlby, Natalie; McHardy, Alice C; Renaux, Alexandre; Saidi, Rabie; Gough, Julian; Freitas, Alex A; Antczak, Magdalena; Fabris, Fabio; Wass, Mark N; Hou, Jie; Cheng, Jianlin; Wang, Zheng; Romero, Alfonso E; Paccanaro, Alberto; Yang, Haixuan; Goldberg, Tatyana; Zhao, Chenguang; Holm, Liisa; Törönen, Petri; Medlar, Alan J; Zosa, Elaine; Borukhov, Itamar; Novikov, Ilya; Wilkins, Angela; Lichtarge, Olivier; Chi, Po-Han; Tseng, Wei-Cheng; Linial, Michal; Rose, Peter W; Dessimoz, Christophe; Vidulin, Vedrana; Dzeroski, Saso; Sillitoe, Ian; Das, Sayoni; Lees, Jonathan Gill; Jones, David T; Wan, Cen; Cozzetto, Domenico; Fa, Rui; Torres, Mateo; Warwick Vesztrocy, Alex; Rodriguez, Jose Manuel; Tress, Michael L; Frasca, Marco; Notaro, Marco; Grossi, Giuliano; Petrini, Alessandro; Re, Matteo; Valentini, Giorgio; Mesiti, Marco; Roche, Daniel B; Reeb, Jonas; Ritchie, David W; Aridhi, Sabeur; Alborzi, Seyed Ziaeddin; Devignes, Marie-Dominique; Koo, Da Chen Emily; Bonneau, Richard; Gligorijević, Vladimir; Barot, Meet; Fang, Hai; Toppo, Stefano; Lavezzo, Enrico; Falda, Marco; Berselli, Michele; Tosatto, Silvio C E; Carraro, Marco; Piovesan, Damiano; Ur Rehman, Hafeez; Mao, Qizhong; Zhang, Shanshan; Vucetic, Slobodan; Black, Gage S; Jo, Dane; Suh, Erica; Dayton, Jonathan B; Larsen, Dallas J; Omdahl, Ashton R; McGuffin, Liam J; Brackenridge, Danielle A; Babbitt, Patricia C; Yunes, Jeffrey M; Fontana, Paolo; Zhang, Feng; Zhu, Shanfeng; You, Ronghui; Zhang, Zihan; Dai, Suyang; Yao, Shuwei; Tian, Weidong; Cao, Renzhi; Chandler, Caleb; Amezola, Miguel; Johnson, Devon; Chang, Jia-Ming; Liao, Wen-Hung; Liu, Yi-Wei; Pascarelli, Stefano; Frank, Yotam; Hoehndorf, Robert; Kulmanov, Maxat; Boudellioua, Imane; Politano, Gianfranco; Di Carlo, Stefano; Benso, Alfredo; Hakala, Kai; Ginter, Filip; Mehryary, Farrokh; Kaewphan, Suwisa; Björne, Jari; Moen, Hans; Tolvanen, Martti E E; Salakoski, Tapio; Kihara, Daisuke; Jain, Aashish; Šmuc, Tomislav; Altenhoff, Adrian; Ben-Hur, Asa; Rost, Burkhard; Brenner, Steven E; Orengo, Christine A; Jeffery, Constance J; Bosco, Giovanni; Hogan, Deborah A; Martin, Maria J; O'Donovan, Claire; Mooney, Sean D; Greene, Casey S; Radivojac, Predrag; Friedberg, Iddo

High-Resolution Mapping of the Escherichia coli Chromosome Reveals Positions of High and Low Transcription

大肠杆菌染色体高分辨率图谱揭示了高转录和低转录区域的位置

Scholz, Scott A; Diao, Rucheng; Wolfe, Michael B; Fivenson, Elayne M; Lin, Xiaoxia Nina; Freddolino, Peter L