日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Automated Force Field Developer and Optimizer Platform: Torsion Reparameterization

自动化力场开发和优化平台:扭转重参数化

Blanco-Gonzalez, Alejandro; Betancourt, William; Snyder, Ryan Michael; Zhang, Shi; Giese, Timothy J; Piskulich, Zeke A; Götz, Andreas W; Merz, Kenneth M Jr; York, Darrin M; Aktulga, Hasan Metin; Manathunga, Madushanka

A Relative Binding Free Energy Framework for Structurally Dissimilar Molecules

结构不同分子的相对结合自由能框架

Tsai, Hsu-Chun; Zhang, Shi; Lee, Tai-Sung; Giese, Timothy J; Lin, Charles; Xu, James; Yi, Yinhui; York, Darrin M; Ganguly, Abir; Pan, Albert C

The QDπ dataset, training data for drug-like molecules and biopolymer fragments and their interactions

QDπ数据集,包含类药分子和生物聚合物片段及其相互作用的训练数据

Zeng, Jinzhe; Giese, Timothy J; Götz, Andreas W; York, Darrin M

DeePMD-kit v3: A Multiple-Backend Framework for Machine Learning Potentials

DeePMD-kit v3:面向机器学习潜力的多后端框架

Zeng, Jinzhe; Zhang, Duo; Peng, Anyang; Zhang, Xiangyu; He, Sensen; Wang, Yan; Liu, Xinzijian; Bi, Hangrui; Li, Yifan; Cai, Chun; Zhang, Chengqian; Du, Yiming; Zhu, Jia-Xin; Mo, Pinghui; Huang, Zhengtao; Zeng, Qiyu; Shi, Shaochen; Qin, Xuejian; Yu, Zhaoxi; Luo, Chenxing; Ding, Ye; Liu, Yun-Pei; Shi, Ruosong; Wang, Zhenyu; Bore, Sigbjørn Løland; Chang, Junhan; Deng, Zhe; Ding, Zhaohan; Han, Siyuan; Jiang, Wanrun; Ke, Guolin; Liu, Zhaoqing; Lu, Denghui; Muraoka, Koki; Oliaei, Hananeh; Singh, Anurag Kumar; Que, Haohui; Xu, Weihong; Xu, Zhangmancang; Zhuang, Yong-Bin; Dai, Jiayu; Giese, Timothy J; Jia, Weile; Xu, Ben; York, Darrin M; Zhang, Linfeng; Wang, Han

FE-ToolKit: A Versatile Software Suite for Analysis of High-Dimensional Free Energy Surfaces and Alchemical Free Energy Networks

FE-ToolKit:用于分析高维自由能曲面和炼金术自由能网络的通用软件套件

Giese, Timothy J; Snyder, Ryan; Piskulich, Zeke; Barletta, German P; Zhang, Shi; McCarthy, Erika; Ekesan, Şölen; York, Darrin M

DeePMD-GNN: A DeePMD-kit Plugin for External Graph Neural Network Potentials

DeePMD-GNN:一个用于外部图神经网络势的DeePMD-kit插件

Zeng, Jinzhe; Giese, Timothy J; Zhang, Duo; Wang, Han; York, Darrin M

Recent Developments in Amber Biomolecular Simulations

Amber生物分子模拟的最新进展

Case, David A; Cerutti, David S; Cruzeiro, Vinícius Wilian D; Darden, Thomas A; Duke, Robert E; Ghazimirsaeed, Mahdieh; Giambaşu, George M; Giese, Timothy J; Götz, Andreas W; Harris, Julie A; Kasavajhala, Koushik; Lee, Tai-Sung; Li, Zhen; Lin, Charles; Liu, Jian; Miao, Yinglong; Salomon-Ferrrer, Romelia; Shen, Jana; Snyder, Ryan; Swails, Jason; Walker, Ross C; Wang, Jinan; Wu, Xiongwu; Zeng, Jinzhe; Cheatham Iii, Thomas E; Roe, Daniel R; Roitberg, Adrian; Simmerling, Carlos; York, Darrin M; Nagan, Maria C; Merz, Kenneth M Jr

Transferability of MACE Graph Neural Network for Range Corrected Δ-Machine Learning Potential QM/MM Applications

MACE图神经网络在范围校正Δ机器学习潜在QM/MM应用中的可迁移性

Giese, Timothy J; Zeng, Jinzhe; York, Darrin M

The Role of General Acid Catalysis in the Mechanism of an Alkyl Transferase Ribozyme

一般酸催化在烷基转移酶核酶机制中的作用

Wilson, Timothy J; McCarthy, Erika; Ekesan, Şölen; Giese, Timothy J; Li, Nan-Sheng; Huang, Lin; Piccirilli, Joseph A; York, Darrin M; Lilley, David M J

Surface-Accelerated String Method for Locating Minimum Free Energy Paths

利用表面加速弦法定位最小自由能路径

Giese, Timothy J; Ekesan, Şölen; McCarthy, Erika; Tao, Yujun; York, Darrin M