日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Remics: a redescription-based framework for multi-omics analysis

Remics:一种基于重新描述的多组学分析框架

Bose, Aritra; Platt, Daniel E; Rhrissorrakrai, Kahn; Burch, Myson; Guzmán-Sáenz, Aldo; Haiminen, Niina; Parida, Laxmi

SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx

SARS-CoV-2 的感染性可通过细菌对糖萼的修饰进行调节。

Martino, Cameron; Kellman, Benjamin P; Sandoval, Daniel R; Clausen, Thomas Mandel; Cooper, Robert; Benjdia, Alhosna; Soualmia, Feryel; Clark, Alex E; Garretson, Aaron F; Marotz, Clarisse A; Song, Se Jin; Wandro, Stephen; Zaramela, Livia S; Salido, Rodolfo A; Zhu, Qiyun; Armingol, Erick; Vázquez-Baeza, Yoshiki; McDonald, Daniel; Sorrentino, James T; Taylor, Bryn; Belda-Ferre, Pedro; Das, Promi; Ali, Farhana; Liang, Chenguang; Zhang, Yujie; Schifanella, Luca; Covizzi, Alice; Lai, Alessia; Riva, Agostino; Basting, Christopher; Broedlow, Courtney Ann; Havulinna, Aki S; Jousilahti, Pekka; Estaki, Mehrbod; Kosciolek, Tomasz; Kuplicki, Rayus; Victor, Teresa A; Paulus, Martin P; Savage, Kristen E; Benbow, Jennifer L; Spielfogel, Emma S; Anderson, Cheryl A M; Martinez, Maria Elena; Lacey, James V Jr; Huang, Shi; Haiminen, Niina; Parida, Laxmi; Kim, Ho-Cheol; Gilbert, Jack A; Sweeney, Daniel A; Allard, Sarah M; Swafford, Austin D; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Zengler, Karsten; Klatt, Nichole R; Hasty, Jeff; Berteau, Olivier; Carlin, Aaron F; Esko, Jeffrey D; Lewis, Nathan E; Knight, Rob

AutoXAI4Omics: an automated explainable AI tool for omics and tabular data

AutoXAI4Omics:一款用于组学和表格数据的自动化可解释人工智能工具

Strudwick, James; Gardiner, Laura-Jayne; Denning-James, Kate; Haiminen, Niina; Evans, Ashley; Kelly, Jennifer; Madgwick, Matthew; Utro, Filippo; Seabolt, Ed; Gibson, Christopher; Bedi, Bharat; Clayton, Daniel; Howell, Ciaron; Parida, Laxmi; Carrieri, Anna Paola

Development and evaluation of statistical and artificial intelligence approaches with microbial shotgun metagenomics data as an untargeted screening tool for use in food production

利用微生物鸟枪法宏基因组学数据开发和评估统计和人工智能方法,作为食品生产中的非靶向筛选工具

Beck, Kristen L; Haiminen, Niina; Agarwal, Akshay; Carrieri, Anna Paola; Madgwick, Matthew; Kelly, Jennifer; Pylro, Victor; Kawas, Ban; Wiedmann, Martin; Ganda, Erika

Correction for Zhu et al., "Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy"

对 Zhu 等人的论文“基于匹配参考基因组绕过分类学的宏基因组群落生态学的系统发育感知分析”的更正

Zhu, Qiyun; Huang, Shi; Gonzalez, Antonio; McGrath, Imran; McDonald, Daniel; Haiminen, Niina; Armstrong, George; Vázquez-Baeza, Yoshiki; Yu, Julian; Kuczynski, Justin; Sepich-Poore, Gregory D; Swafford, Austin D; Das, Promi; Shaffer, Justin P; Lejzerowicz, Franck; Belda-Ferre, Pedro; Havulinna, Aki S; Méric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Kim, Ho-Cheol; Jain, Mohit; Inouye, Michael; Gilbert, Jack A; Knight, Rob

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

地球微生物组的标准化多组学揭示了微生物和代谢物的多样性

Justin P Shaffer #, Louis-Félix Nothias #, Luke R Thompson #, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Se

Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy

基于匹配参考基因组且绕过分类学的宏基因组群落生态学系统发育感知分析

Zhu, Qiyun; Huang, Shi; Gonzalez, Antonio; McGrath, Imran; McDonald, Daniel; Haiminen, Niina; Armstrong, George; Vázquez-Baeza, Yoshiki; Yu, Julian; Kuczynski, Justin; Sepich-Poore, Gregory D; Swafford, Austin D; Das, Promi; Shaffer, Justin P; Lejzerowicz, Franck; Belda-Ferre, Pedro; Havulinna, Aki S; Méric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Kim, Ho-Cheol; Jain, Mohit; Inouye, Michael; Gilbert, Jack A; Knight, Rob

Utilizing stability criteria in choosing feature selection methods yields reproducible results in microbiome data

在微生物组数据中,利用稳定性准则选择特征选择方法可以获得可重复的结果。

Jiang, Lingjing; Haiminen, Niina; Carrieri, Anna-Paola; Huang, Shi; Vázquez-Baeza, Yoshiki; Parida, Laxmi; Kim, Ho-Cheol; Swafford, Austin D; Knight, Rob; Natarajan, Loki

Monitoring the microbiome for food safety and quality using deep shotgun sequencing

利用深度鸟枪法测序监测食品安全和质量的微生物组

Beck, Kristen L; Haiminen, Niina; Chambliss, David; Edlund, Stefan; Kunitomi, Mark; Huang, B Carol; Kong, Nguyet; Ganesan, Balasubramanian; Baker, Robert; Markwell, Peter; Kawas, Ban; Davis, Matthew; Prill, Robert J; Krishnareddy, Harsha; Seabolt, Ed; Marlowe, Carl H; Pierre, Sophie; Quintanar, André; Parida, Laxmi; Dubois, Geraud; Kaufman, James; Weimer, Bart C

Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

高效计算Faith系统发育多样性及其在微生物组表征中的应用

Armstrong, George; Cantrell, Kalen; Huang, Shi; McDonald, Daniel; Haiminen, Niina; Carrieri, Anna Paola; Zhu, Qiyun; Gonzalez, Antonio; McGrath, Imran; Beck, Kristen L; Hakim, Daniel; Havulinna, Aki S; Méric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Jain, Mohit; Inouye, Michael; Swafford, Austin D; Kim, Ho-Cheol; Parida, Laxmi; Vázquez-Baeza, Yoshiki; Knight, Rob