日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Machine learning-optimized targeted detection of alternative splicing

机器学习优化的选择性剪接靶向检测

Yang, Kevin; Islas, Nathaniel; Jewell, San; Wu, Di; Jha, Anupama; Radens, Caleb M; Pleiss, Jeffrey A; Lynch, Kristen W; Barash, Yoseph; Choi, Peter S

Prediction and functional interpretation of inter-chromosomal genome architecture from DNA sequence with TwinC

利用 TwinC 从 DNA 序列预测和功能解释染色体间基因组结构

Jha, Anupama; Hristov, Borislav; Wang, Xiao; Wang, Sheng; Greenleaf, William J; Kundaje, Anshul; Aiden, Erez Lieberman; Bertero, Alessandro; Noble, William Stafford

DNA-m6A calling and integrated long-read epigenetic and genetic analysis with fibertools.

利用 fibertools 进行 DNA-m6A 调用和整合长读表观遗传学和遗传学分析

Jha Anupama, Bohaczuk Stephanie C, Mao Yizi, Ranchalis Jane, Mallory Benjamin J, Min Alan T, Hamm Morgan O, Swanson Elliott, Dubocanin Danilo, Finkbeiner Connor, Li Tony, Whittington Dale, Noble William Stafford, Stergachis Andrew B, Vollger Mitchell R

A generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species

一种适用于跨物种染色质结构、单细胞和多组学分析的通用Hi-C基础模型

Wang, Xiao; Zhang, Yuanyuan; Ray, Suhita; Jha, Anupama; Fang, Tangqi; Hang, Shengqi; Doulatov, Sergei; Noble, William Stafford; Wang, Sheng

Enhancing Hi-C contact matrices for loop detection with Capricorn: a multiview diffusion model

利用 Capricorn 增强 Hi-C 接触矩阵以进行环路检测:一种多视图扩散模型

Fang, Tangqi; Liu, Yifeng; Woicik, Addie; Lu, Minsi; Jha, Anupama; Wang, Xiao; Li, Gang; Hristov, Borislav; Liu, Zixuan; Xu, Hanwen; Noble, William S; Wang, Sheng

RNA splicing analysis using heterogeneous and large RNA-seq datasets

利用异质性和大型RNA-seq数据集进行RNA剪接分析

Vaquero-Garcia, Jorge; Aicher, Joseph K; Jewell, San; Gazzara, Matthew R; Radens, Caleb M; Jha, Anupama; Norton, Scott S; Lahens, Nicholas F; Grant, Gregory R; Barash, Yoseph

Identifying common transcriptome signatures of cancer by interpreting deep learning models

通过解读深度学习模型来识别癌症的常见转录组特征

Jha, Anupama; Quesnel-Vallières, Mathieu; Wang, David; Thomas-Tikhonenko, Andrei; Lynch, Kristen W; Barash, Yoseph

Multi-trait association studies discover pleiotropic loci between Alzheimer's disease and cardiometabolic traits

多性状关联研究发现了阿尔茨海默病与心血管代谢性状之间的多效性位点

Bone, William P; Siewert, Katherine M; Jha, Anupama; Klarin, Derek; Damrauer, Scott M; Chang, Kyong-Mi; Tsao, Philip S; Assimes, Themistocles L; Ritchie, Marylyn D; Voight, Benjamin F

Enhanced Integrated Gradients: improving interpretability of deep learning models using splicing codes as a case study

增强型集成梯度:以拼接码为例,提高深度学习模型的可解释性

Jha, Anupama; K Aicher, Joseph; R Gazzara, Matthew; Singh, Deependra; Barash, Yoseph

Developing transgenic Jatropha using the SbNHX1 gene from an extreme halophyte for cultivation in saline wasteland

利用来自极端盐生植物的SbNHX1基因培育转基因麻疯树,用于盐碱荒地栽培

Joshi, Mukul; Jha, Anupama; Mishra, Avinash; Jha, Bhavanath