日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

A multimorphic variant in ThPOK causes an inborn error of immunity with T cell defects and fibrosis.

ThPOK 的多态性变异会导致先天性免疫缺陷,伴有 T 细胞缺陷和纤维化

Vaseghi-Shanjani Maryam, Sharma Mehul, Yousefi Pariya, Samra Simran, Laverty Kaitlin U, Jolma Arttu, Razavi Rozita, Yang Ally H W, Albu Mihai, Golding Liam, Lee Anna F, Tan Ryan, Richmond Phillip A, Bosticardo Marita, Rayment Jonathan H, Yang Connie L, Hildebrand Kyla J, Brager Rae, Demos Michelle K, Lau Yu-Lung, Notarangelo Luigi D, Hughes Timothy R, Biggs Catherine M, Turvey Stuart E

Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors

跨平台基序发现和基准测试,以探索研究较少的人类转录因子的结合特异性

Vorontsov, Ilya E; Kozin, Ivan; Abramov, Sergey; Boytsov, Alexandr; Jolma, Arttu; Albu, Mihai; Ambrosini, Giovanna; Faltejskova, Katerina; Gralak, Antoni J; Gryzunov, Nikita; Inukai, Sachi; Kolmykov, Semyon; Kravchenko, Pavel; Kribelbauer-Swietek, Judith F; Laverty, Kaitlin U; Nozdrin, Vladimir; Patel, Zain M; Penzar, Dmitry; Plescher, Marie-Luise; Pour, Sara E; Razavi, Rozita; Yang, Ally W H; Yevshin, Ivan; Zinkevich, Arsenii; Weirauch, Matthew T; Bucher, Philipp; Deplancke, Bart; Fornes, Oriol; Grau, Jan; Grosse, Ivo; Kolpakov, Fedor A; Makeev, Vsevolod J; Hughes, Timothy R; Kulakovskiy, Ivan V

Inferring binding specificities of human transcription factors with the wisdom of crowds

利用群体智慧推断人类转录因子的结合特异性

Gryzunov, Nikita; Penzar, Dmitry; Kamenets, Vasilii; Vyaltsev, Valery; Kozin, Ivan; Eliseeva, Irina A; Nozdrin, Vladimir; Vorontsov, Ilya E; Bushuev, Sergey; Strekalovskikh, Vadim; Zinkevich, Arsenii; Andrews, Gregory; Bedarew, Matwej; Blass, Ido; Frolov, Dmitry; Lariushina, Iuliia; Moore, Jill; Orenstein, Yaron; Roev, German; Salimov, Danil; Shimshoviz, Noam; Tziony, Ido; Weng, Zhiping; Bucher, Philipp; Deplancke, Bart; Fornes, Oriol; Grau, Jan; Grosse, Ivo; Jolma, Arttu; Kolpakov, Fedor A; Makeev, Vsevolod J; Hughes, Timothy R; Kulakovskiy, Ivan V

HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors

HOCOMOCO 计划于 2024 年推出:重建人类和小鼠转录因子结合模型的精选集合

Vorontsov, Ilya E; Eliseeva, Irina A; Zinkevich, Arsenii; Nikonov, Mikhail; Abramov, Sergey; Boytsov, Alexandr; Kamenets, Vasily; Kasianova, Alexandra; Kolmykov, Semyon; Yevshin, Ivan S; Favorov, Alexander; Medvedeva, Yulia A; Jolma, Arttu; Kolpakov, Fedor; Makeev, Vsevolod J; Kulakovskiy, Ivan V

Cross-platform DNA motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors

跨平台DNA基序发现和基准测试,以探索研究较少的人类转录因子的结合特异性

Vorontsov, Ilya E; Kozin, Ivan; Abramov, Sergey; Boytsov, Alexandr; Jolma, Arttu; Albu, Mihai; Ambrosini, Giovanna; Faltejskova, Katerina; Gralak, Antoni J; Gryzunov, Nikita; Inukai, Sachi; Kolmykov, Semyon; Kravchenko, Pavel; Kribelbauer-Swietek, Judith F; Laverty, Kaitlin U; Nozdrin, Vladimir; Patel, Zain M; Penzar, Dmitry; Plescher, Marie-Luise; Pour, Sara E; Razavi, Rozita; Yang, Ally W H; Yevshin, Ivan; Zinkevich, Arsenii; Weirauch, Matthew T; Bucher, Philipp; Deplancke, Bart; Fornes, Oriol; Grau, Jan; Grosse, Ivo; Kolpakov, Fedor A; Makeev, Vsevolod J; Hughes, Timothy R; Kulakovskiy, Ivan V

RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific

缺乏典型RNA结合域的RNA结合蛋白很少具有序列特异性。

Ray, Debashish; Laverty, Kaitlin U; Jolma, Arttu; Nie, Kate; Samson, Reuben; Pour, Sara E; Tam, Cyrus L; von Krosigk, Niklas; Nabeel-Shah, Syed; Albu, Mihai; Zheng, Hong; Perron, Gabrielle; Lee, Hyunmin; Najafabadi, Hamed; Blencowe, Benjamin; Greenblatt, Jack; Morris, Quaid; Hughes, Timothy R

PRIESSTESS: interpretable, high-performing models of the sequence and structure preferences of RNA-binding proteins.

PRIESSTESS:可解释的、高性能的 RNA 结合蛋白序列和结构偏好模型

Laverty Kaitlin U, Jolma Arttu, Pour Sara E, Zheng Hong, Ray Debashish, Morris Quaid, Hughes Timothy R

Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences

人类RNA结合蛋白对结构化和线性RNA序列的结合特异性

Jolma, Arttu; Zhang, Jilin; Mondragón, Estefania; Morgunova, Ekaterina; Kivioja, Teemu; Laverty, Kaitlin U; Yin, Yimeng; Zhu, Fangjie; Bourenkov, Gleb; Morris, Quaid; Hughes, Timothy R; Maher, Louis James 3rd; Taipale, Jussi

A bacteriophage mimic of the bacterial nucleoid-associated protein Fis

噬菌体模拟细菌核样体相关蛋白Fis

Chakraborti, Soumyananda; Balakrishnan, Dhanasekaran; Trotter, Alexander J; Gittens, William H; Yang, Ally W H; Jolma, Arttu; Paterson, Joy R; Świątek, Sylwia; Plewka, Jacek; Curtis, Fiona A; Bowers, Laura Y; Pålsson, Lars-Olof; Hughes, Timothy R; Taube, Michał; Kozak, Maciej; Heddle, Jonathan G; Sharples, Gary J

The Human Transcription Factors

人类转录因子

Lambert, Samuel A; Jolma, Arttu; Campitelli, Laura F; Das, Pratyush K; Yin, Yimeng; Albu, Mihai; Chen, Xiaoting; Taipale, Jussi; Hughes, Timothy R; Weirauch, Matthew T