日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Fast and accurate resolution of ecDNA sequence using Cycle-Extractor

使用Cycle-Extractor快速准确地解析ecDNA序列

Faizrahnemoon, Mahsa; Luebeck, Jens; Hung, King L; Rao, Suhas; Prasad, Gino; Wong, Ivy Tsz-Lo; Jones, Matthew G; Mischel, Paul S; Chang, Howard Y; Zhu, Kaiyuan; Bafna, Vineet

scAmp analyzes focal gene amplifications at single-cell resolution

scAmp以单细胞分辨率分析局灶性基因扩增。

Jones, Matthew G; Weiser, Natasha E; Hung, King L; Yan, Xiaowei; Agarwal, Sangya; Luebeck, Jens; Gnanasekar, Aditi; Howitt, Brooke E; Curtis, Ellis J; Yu, Kevin; Rose, John C; Kraft, Katerina; Amiri, Valeh Valiollah Pour; Satpathy, Leena; Bafna, Vineet; Mischel, Paul S; Chang, Howard Y

High-resolution spatial mapping of cell state and lineage dynamics in vivo with PEtracer.

利用 PEtracer 对活体细胞状态和谱系动态进行高分辨率空间映射。

Koblan Luke W, Yost Kathryn E, Zheng Pu, Colgan William N, Jones Matthew G, Yang Dian, Kumar Arhan, Sandhu Jaspreet, Schnell Alexandra, Sun Dawei, Ergen Can, Saunders Reuben A, Zhuang Xiaowei, Allen William E, Yosef Nir, Weissman Jonathan S

Extrachromosomal DNA-Driven Oncogene Spatial Heterogeneity and Evolution in Glioblastoma

胶质母细胞瘤中染色体外DNA驱动的癌基因的空间异质性和演变

Noorani, Imran; Haughey, Magnus; Luebeck, Jens; Rowan, Andrew; Grönroos, Eva; Terenzi, Francesco; Wong, Ivy Tsz-Lo; Pradella, Davide; Lisi, Marta; Kittel, Jeanette; Sharma, Natasha; Bailey, Chris; Weeden, Clare E; Bell, Donald M; Joo, Eric; Barbè, Vittorio; Jones, Matthew G; Hung, King L; Nye, Emma L; Green, Mary; Meader, Lucy; Norton, Emma J; Fabian, Mark; Kanu, Nnennaya; Jamal-Hanjani, Mariam; Santarius, Thomas; Ventura, Andrea; Nicoll, James A R; Boche, Delphine; Chang, Howard Y; Bafna, Vineet; Huang, Weini; Mischel, Paul S; Swanton, Charles; Werner, Benjamin

Enhancer activation from transposable elements in extrachromosomal DNA

染色体外DNA中转座元件的增强子激活

Kraft, Katerina; Murphy, Sedona E; Jones, Matthew G; Shi, Quanming; Bhargava-Shah, Aarohi; Luong, Christy; Hung, King L; He, Britney J; Li, Rui; Park, Seung Kuk; Montgomery, Michael T; Weiser, Natasha E; Wang, Yanbo; Luebeck, Jens; Bafna, Vineet; Boeke, Jef D; Mischel, Paul S; Boettiger, Alistair N; Chang, Howard Y

Unified molecular approach for spatial epigenome, transcriptome, and cell lineages.

空间表观基因组、转录组和细胞谱系的统一分子方法

Huang Yung-Hsin, Belk Julia A, Zhang Ruochi, Weiser Natasha E, Chiang Zachary, Jones Matthew G, Mischel Paul S, Buenrostro Jason D, Chang Howard Y

Genetic elements promote retention of extrachromosomal DNA in cancer cells

遗传因素促进癌细胞中染色体外DNA的滞留

Sankar, Venkat; Hung, King L; Gnanasekar, Aditi; Tsz-Lo Wong, Ivy; Shi, Quanming; Kraft, Katerina; Jones, Matthew G; He, Britney Jiayu; Yan, Xiaowei; Belk, Julia A; Liu, Kevin J; Agarwal, Sangya; Wang, Sean K; Henssen, Anton G; Mischel, Paul S; Chang, Howard Y

High-resolution spatial mapping of cell state and lineage dynamics in vivo with PEtracer

利用 PEtracer 对活体细胞状态和谱系动态进行高分辨率空间映射

Koblan, Luke W; Yost, Kathryn E; Zheng, Pu; Colgan, William N; Jones, Matthew G; Yang, Dian; Kumar, Arhan; Sandhu, Jaspreet; Schnell, Alexandra; Sun, Dawei; Ergen, Can; Saunders, Reuben A; Zhuang, Xiaowei; Allen, William E; Yosef, Nir; Weissman, Jonathan S

EcDNA-borne PVT1 fusion stabilizes oncogenic mRNAs

胞外DNA携带的PVT1融合蛋白可稳定致癌mRNA

Yi, Hyerim; Zhang, Shu; Swinderman, Jason; Wang, Yanbo; Kanakaveti, Vishnupriya; Hung, King L; Wong, Ivy Tsz-Lo; Srinivasan, Suhas; Curtis, Ellis J; Bhargava-Shah, Aarohi; Li, Rui; Jones, Matthew G; Luebeck, Jens; Zhao, Yanding; Belk, Julia A; Kraft, Katerina; Shi, Quanming; Yan, Xiaowei; Pritchard, Simon K; Liang, Frances M; Felsher, Dean W; Gilbert, Luke A; Bafna, Vineet; Mischel, Paul S; Chang, Howard Y

CoRAL accurately resolves extrachromosomal DNA genome structures with long-read sequencing

CoRAL利用长读长测序技术精确解析染色体外DNA基因组结构。

Zhu, Kaiyuan; Jones, Matthew G; Luebeck, Jens; Bu, Xinxin; Yi, Hyerim; Hung, King L; Wong, Ivy Tsz-Lo; Zhang, Shu; Mischel, Paul S; Chang, Howard Y; Bafna, Vineet