日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Advancing regulatory variant effect prediction with AlphaGenome

利用 AlphaGenome 推进调控变异效应预测

Avsec, Žiga; Latysheva, Natasha; Cheng, Jun; Novati, Guido; Taylor, Kyle R; Ward, Tom; Bycroft, Clare; Nicolaisen, Lauren; Arvaniti, Eirini; Pan, Joshua; Thomas, Raina; Dutordoir, Vincent; Perino, Matteo; De, Soham; Karollus, Alexander; Gayoso, Adam; Sargeant, Toby; Mottram, Anne; Wong, Lai Hong; Drotár, Pavol; Kosiorek, Adam; Senior, Andrew; Tanburn, Richard; Applebaum, Taylor; Basu, Souradeep; Hassabis, Demis; Kohli, Pushmeet

scooby: modeling multimodal genomic profiles from DNA sequence at single-cell resolution

Scooby:基于单细胞分辨率的DNA序列构建多模态基因组图谱

Hingerl, Johannes C; Martens, Laura D; Karollus, Alexander; Manz, Trevor; Buenrostro, Jason D; Theis, Fabian J; Gagneur, Julien

Nucleotide dependency analysis of genomic language models detects functional elements

基因组语言模型的核苷酸依赖性分析可检测功能元件

Tomaz da Silva, Pedro; Karollus, Alexander; Hingerl, Johannes; Galindez, Gihanna Sta Teresa; Wagner, Nils; Hernandez-Alias, Xavier; Incarnato, Danny; Gagneur, Julien

Flashzoi: an enhanced Borzoi for accelerated genomic analysis

Flashzoi:一款增强型 Borzoi,用于加速基因组分析

Hingerl, Johannes C; Karollus, Alexander; Gagneur, Julien

scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution

scooby:基于单细胞分辨率的DNA序列构建多模态基因组图谱

Hingerl, Johannes C; Martens, Laura D; Karollus, Alexander; Manz, Trevor; Buenrostro, Jason D; Theis, Fabian J; Gagneur, Julien

Species-aware DNA language models capture regulatory elements and their evolution

物种感知DNA语言模型捕捉调控元件及其演化

Karollus, Alexander; Hingerl, Johannes; Gankin, Dennis; Grosshauser, Martin; Klemon, Kristian; Gagneur, Julien

Viral genome sequencing to decipher in-hospital SARS-CoV-2 transmission events

利用病毒基因组测序来解析医院内SARS-CoV-2传播事件

Esser, Elisabeth; Schulte, Eva C; Graf, Alexander; Karollus, Alexander; Smith, Nicholas H; Michler, Thomas; Dvoretskii, Stefan; Angelov, Angel; Sonnabend, Michael; Peter, Silke; Engesser, Christina; Radonic, Aleksandar; Thürmer, Andrea; von Kleist, Max; Gebhardt, Friedemann; da Costa, Clarissa Prazeres; Busch, Dirk H; Muenchhoff, Maximilian; Blum, Helmut; Keppler, Oliver T; Gagneur, Julien; Protzer, Ulrike

Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancers

目前基于序列的模型能够捕捉启动子中的基因表达决定因素,但大多忽略了远端增强子。

Karollus, Alexander; Mauermeier, Thomas; Gagneur, Julien

The adapted Activity-By-Contact model for enhancer-gene assignment and its application to single-cell data

改进的基于接触的活性模型用于增强子-基因分配及其在单细胞数据中的应用

Hecker, Dennis; Behjati Ardakani, Fatemeh; Karollus, Alexander; Gagneur, Julien; Schulz, Marcel H

Predicting mean ribosome load for 5'UTR of any length using deep learning

利用深度学习预测任意长度 5'UTR 的平均核糖体负载

Karollus, Alexander; Avsec, Žiga; Gagneur, Julien