日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Massively parallel characterization of transcriptional regulatory elements

转录调控元件的大规模并行表征

Agarwal, Vikram; Inoue, Fumitaka; Schubach, Max; Penzar, Dmitry; Martin, Beth K; Dash, Pyaree Mohan; Keukeleire, Pia; Zhang, Zicong; Sohota, Ajuni; Zhao, Jingjing; Georgakopoulos-Soares, Ilias; Noble, William S; Yardımcı, Galip Gürkan; Kulakovskiy, Ivan V; Kircher, Martin; Shendure, Jay; Ahituv, Nadav

Massively parallel reporter assays and mouse transgenic assays provide correlated and complementary information about neuronal enhancer activity.

大规模平行报告基因检测和转基因小鼠检测提供了关于神经元增强子活性的相关和互补信息

Kosicki Michael, Laboy Cintrón Dianne, Keukeleire Pia, Schubach Max, Page Nicholas F, Georgakopoulos-Soares Ilias, Akiyama Jennifer A, Plajzer-Frick Ingrid, Novak Catherine S, Kato Momoe, Hunter Riana D, von Maydell Kianna, Barton Sarah, Godfrey Patrick, Beckman Erik, Sanders Stephan J, Kircher Martin, Pennacchio Len A, Ahituv Nadav

varCADD: large sets of standing genetic variation enable genome-wide pathogenicity prediction

varCADD:大量现有遗传变异数据能够进行全基因组致病性预测。

Nazaretyan, Lusiné; Rentzsch, Philipp; Kircher, Martin

Using individual barcodes to increase quantification power of massively parallel reporter assays

利用单个条形码提高大规模并行报告基因检测的定量能力

Keukeleire, Pia; Rosen, Jonathan D; Göbel-Knapp, Angelina; Salomon, Kilian; Schubach, Max; Kircher, Martin

Uniform processing and analysis of IGVF massively parallel reporter assay data with MPRAsnakeflow

利用 MPRAsnakeflow 对 IGVF 大规模并行报告基因检测数据进行统一处理和分析

Rosen, Jonathan D; Vasanthakumari, Arjun Devadas; Salomon, Kilian; de Lange, Nikola; Dash, Pyaree Mohan; Keukeleire, Pia; Hassan, Ali; Barrera, Alejandro; Kircher, Martin; Love, Michael I; Schubach, Max

CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions

CADD v1.7:利用蛋白质语言模型、调控卷积神经网络和其他核苷酸水平评分来改进全基因组变异预测

Schubach, Max; Maass, Thorben; Nazaretyan, Lusiné; Röner, Sebastian; Kircher, Martin

STIGMA: Single-cell tissue-specific gene prioritization using machine learning

STIGMA:利用机器学习进行单细胞组织特异性基因优先级排序

Balachandran, Saranya; Prada-Medina, Cesar A; Mensah, Martin A; Kakar, Naseebullah; Nagel, Inga; Pozojevic, Jelena; Audain, Enrique; Hitz, Marc-Phillip; Kircher, Martin; Sreenivasan, Varun K A; Spielmann, Malte

LBFextract: Unveiling transcription factor dynamics from liquid biopsy data

LBFextract:从液体活检数据揭示转录因子动态

Lazzeri, Isaac; Spiegl, Benjamin Gernot; Hasenleithner, Samantha O; Speicher, Michael R; Kircher, Martin

cfDNA UniFlow: a unified preprocessing pipeline for cell-free DNA data from liquid biopsies

cfDNA UniFlow:用于处理液体活检中无细胞DNA数据的统一预处理流程

Röner, Sebastian; Burkard, Lea; Speicher, Michael R; Kircher, Martin

GCparagon: evaluating and correcting GC biases in cell-free DNA at the fragment level

GCparagon:在片段水平上评估和校正无细胞DNA中的GC偏差

Spiegl, Benjamin; Kapidzic, Faruk; Röner, Sebastian; Kircher, Martin; Speicher, Michael R