日期 影响因子
日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:
–

Destabilization of Structured RNAs by OPC and TIP4PD Water Models

OPC和TIP4PD水模型对结构化RNA的去稳定作用

期刊:Journal of Chemical Theory and Computation
影响因子:5.5
doi:10.1021/acs.jctc.5c01678
Krepl, Miroslav; Mlýnský, Vojtěch; Rusnáková, Agnesa; Banáš, Pavel; Otyepka, Michal; Šponer, Jiří
发表日期：2026
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Amino acids catalyse RNA formation under ambient alkaline conditions

氨基酸在碱性环境下催化RNA的形成。

期刊:Nature Communications
影响因子:15.7
doi:10.1038/s41467-025-60359-3
Rout, Saroj K; Wunnava, Sreekar; Krepl, Miroslav; Cassone, Giuseppe; Šponer, Judit E; Mast, Christof B; Powner, Matthew W; Braun, Dieter
发表日期：2025
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Can We Ever Develop an Ideal RNA Force Field? Lessons Learned from Simulations of the UUCG RNA Tetraloop and Other Systems

我们能否构建理想的RNA力场？从UUCG RNA四环及其他系统的模拟中汲取的经验教训

期刊:Journal of Chemical Theory and Computation
影响因子:5.5
doi:10.1021/acs.jctc.4c01357
Mlýnský, Vojtěch; Kührová, Petra; Pykal, Martin; Krepl, Miroslav; Stadlbauer, Petr; Otyepka, Michal; Banáš, Pavel; Šponer, Jiří
发表日期：2025
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The Kink-Turn 7 Motif: An Additional Test for RNA Force Field Performance

扭结-转角7基序：RNA力场性能的附加测试

期刊:Journal of Chemical Theory and Computation
影响因子:5.5
doi:10.1021/acs.jctc.5c00776
Lemmens, Toon; Mlýnský, Vojtěch; Šponer, Jiří; Pykal, Martin; Banáš, Pavel; Otyepka, Michal; Krepl, Miroslav
发表日期：2025
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How Binding Site Flexibility Promotes RNA Scanning by TbRGG2 RRM: A Molecular Dynamics Simulation Study

TbRGG2 RRM 结合位点柔性如何促进 RNA 扫描：分子动力学模拟研究

期刊:Journal of Chemical Information and Modeling
影响因子:5.3
doi:10.1021/acs.jcim.4c01954
Lemmens, Toon; Šponer, Jiří; Krepl, Miroslav
发表日期：2025
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Newton's cradle-like allosteric mechanism explains regulatory RsmE RNA binding

牛顿摆式的变构机制解释了调控性RsmE RNA结合

期刊:
影响因子:
doi:10.21203/rs.3.rs-6227789/v1
Finol, Esteban; Damberger, Fred F; Krepl, Miroslav; Flügel, Timo; Dietrich, Priscilla; Michaels, Thomas C T; Vögeli, Beat; Šponer, Jiří; Allain, Frédéric H-T
信号转导
发表日期：2025
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Structure of an internal loop motif with three consecutive U•U mismatches from stem-loop 1 in the 3'-UTR of the SARS-CoV-2 genomic RNA

SARS-CoV-2 基因组 RNA 3'-UTR 中茎环 1 的三个连续 U•U 错配的内部环状基序的结构

期刊:Nucleic Acids Research
影响因子:13.1
doi:10.1093/nar/gkae349
Vögele, Jennifer; Duchardt-Ferner, Elke; Bains, Jasleen Kaur; Knezic, Bozana; Wacker, Anna; Sich, Christian; Weigand, Julia E; Šponer, Jiří; Schwalbe, Harald; Krepl, Miroslav; Wöhnert, Jens
SARS-CoV-2
发表日期：2024
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Comprehensive Assessment of Force-Field Performance in Molecular Dynamics Simulations of DNA/RNA Hybrid Duplexes

对DNA/RNA杂交双链分子动力学模拟中力场性能的综合评估

期刊:Journal of Chemical Theory and Computation
影响因子:5.5
doi:10.1021/acs.jctc.4c00601
Knappeová, Barbora; Mlýnský, Vojtěch; Pykal, Martin; Šponer, Jiří; Banáš, Pavel; Otyepka, Michal; Krepl, Miroslav
发表日期：2024
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Mechanical Stability and Unfolding Pathways of Parallel Tetrameric G-Quadruplexes Probed by Pulling Simulations

通过拉伸模拟探究平行四聚体G-四链体的机械稳定性和展开路径

期刊:Journal of Chemical Information and Modeling
影响因子:5.3
doi:10.1021/acs.jcim.4c00227
Zhang, Zhengyue; Mlýnský, Vojtěch; Krepl, Miroslav; Šponer, Jiří; Stadlbauer, Petr
发表日期：2024
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Simple Adjustment of Intranucleotide Base-Phosphate Interaction in the OL3 AMBER Force Field Improves RNA Simulations

对OL3 AMBER力场中核苷酸内碱基-磷酸相互作用进行简单调整可改善RNA模拟

期刊:Journal of Chemical Theory and Computation
影响因子:5.5
doi:10.1021/acs.jctc.3c00990
Mlýnský, Vojtěch; Kührová, Petra; Stadlbauer, Petr; Krepl, Miroslav; Otyepka, Michal; Banáš, Pavel; Šponer, Jiří
发表日期：2023
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