日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Classification of non-TCGA cancer samples to TCGA molecular subtypes using compact feature sets

利用紧凑特征集将非TCGA癌症样本分类到TCGA分子亚型

Ellrott, Kyle; Wong, Christopher K; Yau, Christina; Castro, Mauro A A; Lee, Jordan A; Karlberg, Brian J; Grewal, Jasleen K; Lagani, Vincenzo; Tercan, Bahar; Friedl, Verena; Hinoue, Toshinori; Uzunangelov, Vladislav; Westlake, Lindsay; Loinaz, Xavier; Felau, Ina; Wang, Peggy I; Kemal, Anab; Caesar-Johnson, Samantha J; Shmulevich, Ilya; Lazar, Alexander J; Tsamardinos, Ioannis; Hoadley, Katherine A; Robertson, A Gordon; Knijnenburg, Theo A; Benz, Christopher C; Stuart, Joshua M; Zenklusen, Jean C; Cherniack, Andrew D; Laird, Peter W

Three-dimensional genome landscape of primary human cancers.

人类原发性癌症的三维基因组图谱

Yost Kathryn E, Zhao Yanding, Hung King L, Zhu Kaiyuan, Xu Duo, Corces M Ryan, Shams Shadi, Louie Bryan H, Sarmashghi Shahab, Sundaram Laksshman, Luebeck Jens, Clarke Stanley, Doane Ashley S, Granja Jeffrey M, Choudhry Hani, Imieliński Marcin, Cherniack Andrew D, Khurana Ekta, Bafna Vineet, Felau Ina, Zenklusen Jean C, Laird Peter W, Curtis Christina, Greenleaf William J, Chang Howard Y

Genome-wide profiling of unmodified DNA using methyltransferase-directed tagging and enrichment

利用甲基转移酶定向标记和富集技术对未修饰DNA进行全基因组分析

Tosti, Luca; Mould, Calum; Gatehouse, Imogen; Smith, Anthony C; Ubych, Krystian; Miano, Valentina; Laird, Peter W; Kennefick, Jack; Neely, Robert K

Pan-cancer immune and stromal deconvolution predicts clinical outcomes and mutation profiles

泛癌免疫和基质去卷积预测临床结果和突变谱

Bhinder, Bhavneet; Friedl, Verena; Sethuraman, Sunantha; Risso, Davide; Chiotti, Kami E; Mashl, R Jay; Ellrott, Kyle P; Lee, Jordan A; Wong, Christopher K; Gyan, Kofi; Deshpande, Aditya; Imielinski, Marcin; Bareja, Rohan; Stuart, Josh; Peto, Myron; Hoadley, Katherine A; Lazar, Alexander J; Cherniack, Andrew D; Zhu, Jingchun; Cao, Shaolong; Rubin, Mark; Wang, Wenyi; Bathe, Oliver F; Robine, Nicolas; Ding, Li; Laird, Peter W; Zhou, Wanding; Shen, Hui; Thorsson, Vésteinn; Yeh, Jen Jen; Bailey, Matthew H; Zhou, Daniel Cui; Peng, Xianlu L; Goldman, Mary; Li, Yongsheng; Korkut, Anil; Sahni, Nidhi; Hayes, D Neil; Mensah, Michael K A; Felau, Ina; Kemal, Anab; Caesar-Johnson, Samantha; Demchok, John A; Yang, Liming; Ferguson, Martin L; Tarnuzzer, Roy; Wang, Zhining; Zenklusen, Jean C; Spellman, Paul; Elemento, Olivier

Protocol for assessing distances in pathway space for classifier feature sets from machine learning methods

用于评估机器学习方法分类器特征集在路径空间中距离的协议

Tercan, Bahar; Apolonio, Victor H; Chagas, Vinicius S; Wong, Christopher K; Lee, Jordan A; Yau, Christina; Benz, Christopher C; Stuart, Joshua M; Karlberg, Brian J; Ellrott, Kyle; Grewal, Jasleen K; Jones, Steven J M; Zenklusen, Jean C; Robertson, A Gordon; Laird, Peter W; Cherniack, Andrew D; Castro, Mauro A A

Protocol for obtaining cancer type and subtype predictions using subSCOPE

使用 subSCOPE 获取癌症类型和亚型预测的方案

Grewal, Jasleen K; Robertson, A Gordon; Ellrott, Kyle; Wong, Christopher K; Lee, Jordan A; Yau, Christina; Tercan, Bahar; Castro, Mauro A A; Benz, Christopher C; Zenklusen, Jean C; Cherniack, Andrew D; Laird, Peter W; Jones, Steven J M

Single-cell chromatin accessibility reveals malignant regulatory programs in primary human cancers

单细胞染色质可及性揭示原发性人类癌症中的恶性调控程序

Sundaram, Laksshman; Kumar, Arvind; Zatzman, Matthew; Salcedo, Adriana; Ravindra, Neal; Shams, Shadi; Louie, Bryan H; Bagdatli, S Tansu; Myers, Matthew A; Sarmashghi, Shahab; Choi, Hyo Young; Choi, Won-Young; Yost, Kathryn E; Zhao, Yanding; Granja, Jeffrey M; Hinoue, Toshinori; Hayes, D Neil; Cherniack, Andrew; Felau, Ina; Choudhry, Hani; Zenklusen, Jean C; Farh, Kyle Kai-How; McPherson, Andrew; Curtis, Christina; Laird, Peter W; Demchok, John A; Yang, Liming; Tarnuzzer, Roy; Caesar-Johnson, Samantha J; Wang, Zhining; Doane, Ashley S; Khurana, Ekta; Castro, Mauro A A; Lazar, Alexander J; Broom, Bradley M; Weinstein, John N; Akbani, Rehan; Kumar, Shwetha V; Raphael, Benjamin J; Wong, Christopher K; Stuart, Joshua M; Safavi, Rojin; Benz, Christopher C; Johnson, Benjamin K; Kyi, Cindy; Shen, Hui; Corces, M Ryan; Chang, Howard Y; Greenleaf, William J

BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies

BISCUIT:一套高效、符合标准的工具套件,用于在批量和单细胞研究中同时进行遗传和表观遗传推断。

Zhou, Wanding; Johnson, Benjamin K; Morrison, Jacob; Beddows, Ian; Eapen, James; Katsman, Efrat; Semwal, Ayush; Habib, Walid Abi; Heo, Lyong; Laird, Peter W; Berman, Benjamin P; Triche, Timothy J Jr; Shen, Hui

Ultrasensitive Amplification-Free Quantification of a Methyl CpG-Rich Cancer Biomarker by Single-Molecule Kinetic Fingerprinting

利用单分子动力学指纹图谱技术对富含甲基CpG的癌症生物标志物进行超灵敏、无需扩增的定量分析

Dai, Liuhan; Johnson-Buck, Alexander; Laird, Peter W; Tewari, Muneesh; Walter, Nils G

Multiomics in primary and metastatic breast tumors from the AURORA US network finds microenvironment and epigenetic drivers of metastasis

来自 AURORA 美国网络的对原发性和转移性乳腺肿瘤的多组学分析发现了转移的微环境和表观遗传驱动因素

Garcia-Recio, Susana; Hinoue, Toshinori; Wheeler, Gregory L; Kelly, Benjamin J; Garrido-Castro, Ana C; Pascual, Tomas; De Cubas, Aguirre A; Xia, Youli; Felsheim, Brooke M; McClure, Marni B; Rajkovic, Andrei; Karaesmen, Ezgi; Smith, Markia A; Fan, Cheng; Ericsson, Paula I Gonzalez; Sanders, Melinda E; Creighton, Chad J; Bowen, Jay; Leraas, Kristen; Burns, Robyn T; Coppens, Sara; Wheless, Amy; Rezk, Salma; Garrett, Amy L; Parker, Joel S; Foy, Kelly K; Shen, Hui; Park, Ben H; Krop, Ian; Anders, Carey; Gastier-Foster, Julie; Rimawi, Mothaffar F; Nanda, Rita; Lin, Nancy U; Isaacs, Claudine; Marcom, P Kelly; Storniolo, Anna Maria; Couch, Fergus J; Chandran, Uma; Davis, Michael; Silverstein, Jonathan; Ropelewski, Alexander; Liu, Minetta C; Hilsenbeck, Susan G; Norton, Larry; Richardson, Andrea L; Symmans, W Fraser; Wolff, Antonio C; Davidson, Nancy E; Carey, Lisa A; Lee, Adrian V; Balko, Justin M; Hoadley, Katherine A; Laird, Peter W; Mardis, Elaine R; King, Tari A; Perou, Charles M