日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Partitioned multi-MUM finding for scalable pangenomics with MumemtoM

利用 MumemtoM 进行分区多 MUM 发现,以实现可扩展的泛基因组学

Shivakumar, Vikram S; Langmead, Ben

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification

Col-BWT:基于最大匹配的泛基因组种子链式连接可提高读取分类效率

Brown, Nathaniel K; Shivakumar, Vikram S; Langmead, Ben

RLBWT-Based LCP Computation in Compressed Space for Terabase-Scale Pangenome Analysis

基于 RLBWT 的压缩空间 LCP 计算用于太碱基级泛基因组分析

Sanaullah, Ahsan; Brown, Nathaniel K; Shakya, Pramesh; Deegutla, Arun; Naseri, Ardalan; Langmead, Ben; Zhi, Degui; Zhang, Shaojie

KeBaB: k-mer based breaking for finding long MEMs

KeBaB:基于k-mer的断裂方法,用于寻找长MEMS

Brown, Nathaniel K; Depuydt, Lore; Zakeri, Mohsen; Alhadi, Anas; Allam, Nour; Begleiter, Dove; Kabilan Karpagavalli, Nithin Bharathi; Khajjayam, Suchith Sridhar; Wahed, Hamza; Gagie, Travis; Langmead, Ben

Prefix-free parsing for merging big BWTs

用于合并大型 BWT 的无前缀解析

Díaz-Domínguez, Diego; Gagie, Travis; Guerrini, Veronica; Langmead, Ben; Lipták, Zsuzsanna; Manzini, Giovanni; Masillo, Francesco; Shivakumar, Vikram

Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data

不完整的人类参考基因组可能导致错误的性别偏倚,并可能在宏基因组数据中泄露患者身份信息。

Guccione, Caitlin; Patel, Lucas; Tomofuji, Yoshihiko; McDonald, Daniel; Gonzalez, Antonio; Sepich-Poore, Gregory D; Sonehara, Kyuto; Zakeri, Mohsen; Chen, Yang; Dilmore, Amanda Hazel; Damle, Neil; Baranzini, Sergio E; Hightower, George; Nakatsuji, Teruaki; Gallo, Richard L; Langmead, Ben; Okada, Yukinori; Curtius, Kit; Knight, Rob

Large-scale RNA-Seq mining reveals ciclopirox olamine induces TDP-43 cryptic exons.

大规模 RNA-Seq 挖掘揭示环吡咯醇胺诱导 TDP-43 隐蔽外显子

Sinha Irika R, Sandal Parker S, Spence Holly, Burns Grace D, Mallika Aswathy Peethambaran, Abbasinejad Fatemeh, Irwin Katherine E, Cruz Anna Lourdes F, Wang Vania, Marx Shaelyn R, Rodríguez Josué Llamas, Langmead Ben, Gregory Jenna M, Wong Philip C, Ling Jonathan P

Robust 16S rRNA classification based on a compressed LCA index

基于压缩LCA指数的稳健16S rRNA分类

Ahmed, Omar; Boucher, Christina; Langmead, Ben

IGLoo enables comprehensive analysis and assembly of immunoglobulin heavy-chain loci in lymphoblastoid cell lines using PacBio high-fidelity reads

IGLoo利用PacBio高保真读段,能够对淋巴母细胞系中的免疫球蛋白重链基因座进行全面分析和组装。

Lin, Mao-Jan; Langmead, Ben; Safonova, Yana

Run-length compressed metagenomic read classification with SMEM-finding and tagging

基于SMEM查找和标记的运行长度压缩宏基因组读段分类

Depuydt, Lore; Ahmed, Omar Y; Fostier, Jan; Langmead, Ben; Gagie, Travis