日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models

JASPAR 2026:转录因子结合谱的扩展和深度学习模型的整合

Ovek Baydar, Damla; Rauluseviciute, Ieva; Aronsen, Dina R; Blanc-Mathieu, Romain; Bonthuis, Ine; de Beukelaer, Herman; Ferenc, Katalin; Jegou, Alice; Kumar, Vipin; Lemma, Roza Berhanu; Lucas, Jérémy; Pochon, Mathis; Yun, Chang M; Ramalingam, Vivekanandan; Deshpande, Salil Sanjay; Patel, Aman; Marinov, Georgi K; Wang, Austin T; Aguirre, Alejandro; Castro-Mondragon, Jaime A; Baranasic, Damir; Chèneby, Jeanne; Gundersen, Sveinung; Johansen, Morten; Khan, Aziz; Kuijjer, Marieke L; Hovig, Eivind; Lenhard, Boris; Sandelin, Albin; Vandepoele, Klaas; Wasserman, Wyeth W; Parcy, François; Kundaje, Anshul; Mathelier, Anthony

Correction: Widespread 3'UTR capped RNAs derive from G-rich regions in proximity to AGO2 binding sites

更正:广泛存在的3'UTR加帽RNA来源于AGO2结合位点附近的富含G的区域。

Haberman, Nejc; Digby, Holly; Faraway, Rupert; Cheung, Rebecca; Chakrabarti, Anob M; Jobbins, Andrew M; Parr, Callum; Yasuzawa, Kayoko; Kasukawa, Takeya; Yip, Chi Wai; Kato, Masaki; Takahashi, Hazuki; Carninci, Piero; Vernia, Santiago; Ule, Jernej; Sibley, Christopher R; Martinez-Sanchez, Aida; Lenhard, Boris

Conservation of regulatory elements with highly diverged sequences across large evolutionary distances

在进化距离很远的情况下,具有高度分化序列的调控元件仍然保守

Phan, Mai H Q; Zehnder, Tobias; Puntieri, Fiona; Magg, Andreas; Majchrzycka, Blanka; Antonović, Milan; Wieler, Hannah; Lo, Bai-Wei; Baranasic, Damir; Lenhard, Boris; Müller, Ferenc; Vingron, Martin; Ibrahim, Daniel M

Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states

利用染色质深度学习模型,根据组蛋白修饰预测基因表达取决于组蛋白修饰的功能、调控距离和细胞状态。

Murphy, Alan E; Askarova, Aydan; Lenhard, Boris; Skene, Nathan G; Marzi, Sarah J

A dual enhancer-attenuator element ensures transient Cdx2 expression during mouse posterior body formation.

双增强子-衰减子元件确保小鼠后体形成过程中 Cdx2 的瞬时表达。

Amblard Irène, Baranasic Damir, Xie Sheila Q, Moyon Benjamin, Percharde Michelle, Lenhard Boris, Metzis Vicki

JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles

JASPAR 2024:转录因子结合谱开放获取数据库成立20周年

Rauluseviciute, Ieva; Riudavets-Puig, Rafael; Blanc-Mathieu, Romain; Castro-Mondragon, Jaime A; Ferenc, Katalin; Kumar, Vipin; Lemma, Roza Berhanu; Lucas, Jérémy; Chèneby, Jeanne; Baranasic, Damir; Khan, Aziz; Fornes, Oriol; Gundersen, Sveinung; Johansen, Morten; Hovig, Eivind; Lenhard, Boris; Sandelin, Albin; Wasserman, Wyeth W; Parcy, François; Mathelier, Anthony

Identification of transcription factor co-binding patterns with non-negative matrix factorization

利用非负矩阵分解法识别转录因子共结合模式

Rauluseviciute, Ieva; Launay, Timothée; Barzaghi, Guido; Nikumbh, Sarvesh; Lenhard, Boris; Krebs, Arnaud Regis; Castro-Mondragon, Jaime A; Mathelier, Anthony

Liver kinase B1 (LKB1) regulates the epigenetic landscape of mouse pancreatic beta cells

肝激酶B1 (LKB1) 调控小鼠胰岛β细胞的表观遗传图谱

Haberman, Nejc; Cheung, Rebecca; Pizza, Grazia; Cvetesic, Nevena; Nagy, Dorka; Maude, Hannah; Blazquez, Lorea; Lenhard, Boris; Cebola, Inês; Rutter, Guy A; Martinez-Sanchez, Aida

Identifying promoter sequence architectures via a chunking-based algorithm using non-negative matrix factorisation

利用基于分块的非负矩阵分解算法识别启动子序列结构

Nikumbh, Sarvesh; Lenhard, Boris

Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements

斑马鱼顺式调控元件的功能分层和发育动态的多组学图谱

Baranasic, Damir; Hörtenhuber, Matthias; Balwierz, Piotr J; Zehnder, Tobias; Mukarram, Abdul Kadir; Nepal, Chirag; Várnai, Csilla; Hadzhiev, Yavor; Jimenez-Gonzalez, Ada; Li, Nan; Wragg, Joseph; D'Orazio, Fabio M; Relic, Dorde; Pachkov, Mikhail; Díaz, Noelia; Hernández-Rodríguez, Benjamín; Chen, Zelin; Stoiber, Marcus; Dong, Michaël; Stevens, Irene; Ross, Samuel E; Eagle, Anne; Martin, Ryan; Obasaju, Oluwapelumi; Rastegar, Sepand; McGarvey, Alison C; Kopp, Wolfgang; Chambers, Emily; Wang, Dennis; Kim, Hyejeong R; Acemel, Rafael D; Naranjo, Silvia; Łapiński, Maciej; Chong, Vanessa; Mathavan, Sinnakaruppan; Peers, Bernard; Sauka-Spengler, Tatjana; Vingron, Martin; Carninci, Piero; Ohler, Uwe; Lacadie, Scott Allen; Burgess, Shawn M; Winata, Cecilia; van Eeden, Freek; Vaquerizas, Juan M; Gómez-Skarmeta, José Luis; Onichtchouk, Daria; Brown, Ben James; Bogdanovic, Ozren; van Nimwegen, Erik; Westerfield, Monte; Wardle, Fiona C; Daub, Carsten O; Lenhard, Boris; Müller, Ferenc