日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Advantages of Software Containerization in Public Health Infectious Disease Genomic Surveillance

软件容器化在公共卫生传染病基因组监测中的优势

Florek, Kelsey R; Young, Erin L; Incekara, Kutluhan; Libuit, Kevin G; Kapsak, Curtis J

Real-time, multi-pathogen wastewater genomic surveillance with Freyja 2

利用 Freyja 2 进行实时、多病原体废水基因组监测

Levy, Joshua I; Gangavarapu, Praneeth; Pilz, Dylan A; Jesvaghane, Maryam Ahmadi; Steedman, Allison; Zeller, Mark; Gangavarapu, Karthik; McDonald, Daniel; Libuit, Kevin; Kapsak, Curtis; Young, Erin L; Agrawal, Shelesh; Orschler, Laura; Hölzer, Martin; Stachler, Elyse; Park, Daniel J; Hinrichs, Angie S; Laurent, Louise C; Knight, Rob; Andersen, Kristian G

Development of an amplicon-based sequencing approach in response to the global emergence of mpox

为应对全球范围内的脓疱疮疫情,开发了一种基于扩增子的测序方法。

Chen, Nicholas F G; Chaguza, Chrispin; Gagne, Luc; Doucette, Matthew; Smole, Sandra; Buzby, Erika; Hall, Joshua; Ash, Stephanie; Harrington, Rachel; Cofsky, Seana; Clancy, Selina; Kapsak, Curtis J; Sevinsky, Joel; Libuit, Kevin; Park, Daniel J; Hemarajata, Peera; Garrigues, Jacob M; Green, Nicole M; Sierra-Patev, Sean; Carpenter-Azevedo, Kristin; Huard, Richard C; Pearson, Claire; Incekara, Kutluhan; Nishimura, Christina; Huang, Jian Ping; Gagnon, Emily; Reever, Ethan; Razeq, Jafar; Muyombwe, Anthony; Borges, Vítor; Ferreira, Rita; Sobral, Daniel; Duarte, Silvia; Santos, Daniela; Vieira, Luís; Gomes, João Paulo; Aquino, Carly; Savino, Isabella M; Felton, Karinda; Bajwa, Moneeb; Hayward, Nyjil; Miller, Holly; Naumann, Allison; Allman, Ria; Greer, Neel; Fall, Amary; Mostafa, Heba H; McHugh, Martin P; Maloney, Daniel M; Dewar, Rebecca; Kenicer, Juliet; Parker, Abby; Mathers, Katharine; Wild, Jonathan; Cotton, Seb; Templeton, Kate E; Churchwell, George; Lee, Philip A; Pedrosa, Maria; McGruder, Brenna; Schmedes, Sarah; Plumb, Matthew R; Wang, Xiong; Barcellos, Regina Bones; Godinho, Fernanda M S; Salvato, Richard Steiner; Ceniseros, Aimee; Breban, Mallery I; Grubaugh, Nathan D; Gallagher, Glen R; Vogels, Chantal B F

Pathogen genomics in public health laboratories: successes, challenges, and lessons learned from California's SARS-CoV-2 Whole-Genome Sequencing Initiative, California COVIDNet

公共卫生实验室中的病原体基因组学:加州 SARS-CoV-2 全基因组测序计划的成功、挑战和经验教训,加州 COVIDNet

Emily A Smith, Kevin G Libuit, Curtis J Kapsak, Michelle R Scribner, Sage M Wright, John Bell, Christina Morales, Megan Crumpler, Sharon Messenger, Jill K Hacker, Katya Ledin, Carol Glaser, Kathleen Jacobson, Joel R Sevinsky, Debra A Wadford

Accelerating bioinformatics implementation in public health

加速生物信息学在公共卫生领域的应用

Libuit, Kevin G; Doughty, Emma L; Otieno, James R; Ambrosio, Frank; Kapsak, Curtis J; Smith, Emily A; Wright, Sage M; Scribner, Michelle R; Petit Iii, Robert A; Mendes, Catarina Inês; Huergo, Marcela; Legacki, Gregory; Loreth, Christine; Park, Daniel J; Sevinsky, Joel R

TheiaEuk: a species-agnostic bioinformatics workflow for fungal genomic characterization

TheiaEuk:一种与物种无关的真菌基因组表征生物信息学工作流程

Ambrosio, Frank J 3rd; Scribner, Michelle R; Wright, Sage M; Otieno, James R; Doughty, Emma L; Gorzalski, Andrew; Siao, Danielle Denise; Killian, Steve; Hua, Chi; Schneider, Emily; Tran, Michael; Varghese, Vici; Libuit, Kevin G; Pandori, Mark; Sevinsky, Joel R; Hess, David

GAMBIT (Genomic Approximation Method for Bacterial Identification and Tracking): A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification

GAMBIT(细菌鉴定和追踪的基因组近似方法):一种利用细菌分离株的全基因组测序快速进行临床鉴定的方法。

Lumpe, Jared; Gumbleton, Lynette; Gorzalski, Andrew; Libuit, Kevin; Varghese, Vici; Lloyd, Tyler; Tadros, Farid; Arsimendi, Tyler; Wagner, Eileen; Stephens, Craig; Sevinsky, Joel; Hess, David; Pandori, Mark

Development of an amplicon-based sequencing approach in response to the global emergence of human monkeypox virus

为应对全球范围内人类猴痘病毒的出现,开发了一种基于扩增子的测序方法

Chen, Nicholas F G; Chaguza, Chrispin; Gagne, Luc; Doucette, Matthew; Smole, Sandra; Buzby, Erika; Hall, Joshua; Ash, Stephanie; Harrington, Rachel; Cofsky, Seana; Clancy, Selina; Kapsak, Curtis J; Sevinsky, Joel; Libuit, Kevin; Park, Daniel J; Hemarajata, Peera; Garrigues, Jacob M; Green, Nicole M; Sierra-Patev, Sean; Carpenter-Azevedo, Kristin; Huard, Richard C; Pearson, Claire; Incekara, Kutluhan; Nishimura, Christina; Huang, Jian Ping; Gagnon, Emily; Reever, Ethan; Razeq, Jafar; Muyombwe, Anthony; Borges, Vítor; Ferreira, Rita; Sobral, Daniel; Duarte, Silvia; Santos, Daniela; Vieira, Luís; Gomes, João Paulo; Aquino, Carly; Savino, Isabella M; Felton, Karinda; Bajwa, Moneeb; Hayward, Nyjil; Miller, Holly; Naumann, Allison; Allman, Ria; Greer, Neel; Fall, Amary; Mostafa, Heba H; McHugh, Martin P; Maloney, Daniel M; Dewar, Rebecca; Kenicer, Juliet; Parker, Abby; Mathers, Katharine; Wild, Jonathan; Cotton, Seb; Templeton, Kate E; Churchwell, George; Lee, Philip A; Pedrosa, Maria; McGruder, Brenna; Schmedes, Sarah; Plumb, Matthew R; Wang, Xiong; Barcellos, Regina Bones; Godinho, Fernanda M S; Salvato, Richard Steiner; Ceniseros, Aimee; Breban, Mallery I; Grubaugh, Nathan D; Gallagher, Glen R; Vogels, Chantal B F

Rapid repeat infection of SARS-CoV-2 by two highly distinct delta-lineage viruses

两种截然不同的 delta 谱系病毒快速重复感染 SARS-CoV-2

Andrew J Gorzalski, Christina Boyles, Victoria Sepcic, Subhash Verma, Joel Sevinsky, Kevin Libuit, Stephanie Van Hooser, Mark W Pandori

GalaxyTrakr: a distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians

GalaxyTrakr:一款面向公共卫生全基因组序列数据的分布式分析工具,非生物信息学家也可使用。

Gangiredla, Jayanthi; Rand, Hugh; Benisatto, Daniel; Payne, Justin; Strittmatter, Charles; Sanders, Jimmy; Wolfgang, William J; Libuit, Kevin; Herrick, James B; Prarat, Melanie; Toro, Magaly; Farrell, Thomas; Strain, Errol