日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Methods for safely sharing dual-use genetic data

安全共享双用途基因数据的方法

Sawaya, Sterling; Lo, Chien-Chi; Li, Po-E; Hovde, Blake; Chain, Patrick

Standardized and accessible multi-omics bioinformatics workflows through the NMDC EDGE resource

通过 NMDC EDGE 资源提供标准化且易于使用的多组学生物信息学工作流程

Kelliher, Julia M; Xu, Yan; Flynn, Mark C; Babinski, Michal; Canon, Shane; Cavanna, Eric; Clum, Alicia; Corilo, Yuri E; Fujimoto, Grant; Giberson, Cameron; Johnson, Leah Y D; Li, Kaitlyn J; Li, Po-E; Li, Valerie; Lo, Chien-Chi; Lynch, Wendi; Piehowski, Paul; Prime, Kaelan; Purvine, Samuel; Rodriguez, Francisca; Roux, Simon; Shakya, Migun; Smith, Montana; Sarrafan, Setareh; Cholia, Shreyas; McCue, Lee Ann; Mungall, Chris; Hu, Bin; Eloe-Fadrosh, Emiley A; Chain, Patrick S G

Recommendations for Uniform Variant Calling of SARS-CoV-2 Genome Sequence across Bioinformatic Workflows

关于在生物信息学工作流程中统一检测SARS-CoV-2基因组序列变异的建议

Connor, Ryan; Shakya, Migun; Yarmosh, David A; Maier, Wolfgang; Martin, Ross; Bradford, Rebecca; Brister, J Rodney; Chain, Patrick S G; Copeland, Courtney A; di Iulio, Julia; Hu, Bin; Ebert, Philip; Gunti, Jonathan; Jin, Yumi; Katz, Kenneth S; Kochergin, Andrey; LaRosa, Tré; Li, Jiani; Li, Po-E; Lo, Chien-Chi; Rashid, Sujatha; Maiorova, Evguenia S; Xiao, Chunlin; Zalunin, Vadim; Purcell, Lisa; Pruitt, Kim D

Genomic and Phenotypic Characterization of Shiga Toxin-Producing Escherichia albertii Strains Isolated from Wild Birds in a Major Agricultural Region in California

对从加州主要农业区野生鸟类中分离出的产志贺毒素大肠杆菌菌株进行基因组和表型表征

Carter, Michelle Qiu; Quiñones, Beatriz; He, Xiaohua; Pham, Antares; Carychao, Diana; Cooley, Michael B; Lo, Chien-Chi; Chain, Patrick S G; Lindsey, Rebecca L; Bono, James L

Bridging Place-Based Astrobiology Education with Genomics, Including Descriptions of Three Novel Bacterial Species Isolated from Mars Analog Sites of Cultural Relevance

将基于地点的天体生物学教育与基因组学联系起来,包括对从具有文化意义的火星类似地点分离出的三种新型细菌物种的描述

Prescott, Rebecca D; Chan, Yvonne L; Tong, Eric J; Bunn, Fiona; Onouye, Chiyoko T; Handel, Christy; Lo, Chien-Chi; Davenport, Karen; Johnson, Shannon; Flynn, Mark; Saito, Jennifer A; Lee, Herb Jr; Wong, Kaleomanuiwa; Lawson, Brittany N; Hiura, Kayla; Sager, Kailey; Sadones, Mia; Hill, Ethan C; Esibill, Derek; Cockell, Charles S; Santomartino, Rosa; Chain, Patrick S G; Decho, Alan W; Donachie, Stuart P

Comparative Genomics Applied to Systematically Assess Pathogenicity Potential in Shiga Toxin-Producing Escherichia coli O145:H28

比较基因组学在系统评估产志贺毒素大肠杆菌O145:H28致病潜力中的应用

Carter, Michelle Qiu; Laniohan, Nicole; Lo, Chien-Chi; Chain, Patrick S G

Benchmark datasets for SARS-CoV-2 surveillance bioinformatics

SARS-CoV-2 监测生物信息学基准数据集

Xiaoli, Lingzi; Hagey, Jill V; Park, Daniel J; Gulvik, Christopher A; Young, Erin L; Alikhan, Nabil-Fareed; Lawsin, Adrian; Hassell, Norman; Knipe, Kristen; Oakeson, Kelly F; Retchless, Adam C; Shakya, Migun; Lo, Chien-Chi; Chain, Patrick; Page, Andrew J; Metcalf, Benjamin J; Su, Michelle; Rowell, Jessica; Vidyaprakash, Eshaw; Paden, Clinton R; Huang, Andrew D; Roellig, Dawn; Patel, Ketan; Winglee, Kathryn; Weigand, Michael R; Katz, Lee S

Towards increased accuracy and reproducibility in SARS-CoV-2 next generation sequence analysis for public health surveillance

提高SARS-CoV-2下一代序列分析在公共卫生监测中的准确性和可重复性

Connor, Ryan; Yarmosh, David A; Maier, Wolfgang; Shakya, Migun; Martin, Ross; Bradford, Rebecca; Brister, J Rodney; Chain, Patrick Sg; Copeland, Courtney A; di Iulio, Julia; Hu, Bin; Ebert, Philip; Gunti, Jonathan; Jin, Yumi; Katz, Kenneth S; Kochergin, Andrey; LaRosa, Tré; Li, Jiani; Li, Po-E; Lo, Chien-Chi; Rashid, Sujatha; Maiorova, Evguenia S; Xiao, Chunlin; Zalunin, Vadim; Pruitt, Kim D

EDGE COVID-19: a web platform to generate submission-ready genomes from SARS-CoV-2 sequencing efforts

EDGE COVID-19:一个利用 SARS-CoV-2 测序数据生成可提交基因组的网络平台

Lo, Chien-Chi; Shakya, Migun; Connor, Ryan; Davenport, Karen; Flynn, Mark; Gutiérrez, Adán Myers Y; Hu, Bin; Li, Po-E; Jackson, Elais Player; Xu, Yan; Chain, Patrick S G

Bioinformatic and Mechanistic Analysis of the Palmerolide PKS-NRPS Biosynthetic Pathway From the Microbiome of an Antarctic Ascidian

南极海鞘微生物组中帕尔梅洛苷PKS-NRPS生物合成途径的生物信息学和机制分析

Avalon, Nicole E; Murray, Alison E; Daligault, Hajnalka E; Lo, Chien-Chi; Davenport, Karen W; Dichosa, Armand E K; Chain, Patrick S G; Baker, Bill J