日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

对8个实验室和野生小鼠品系的8种组织进行系统性的细胞类型解析转录组分析,揭示了整体和局部表达变异。

Rebboah, Elisabeth; Weber, Ryan; Abdollahzadeh, Elnaz; Swarna, Nikhila; Sullivan, Delaney K; Trout, Diane; Reese, Fairlie; Liang, Heidi Yahan; Filimban, Ghassan; Mahdipoor, Parvin; Duffield, Margaret; Mojaverzargar, Romina; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Zhang, Haoran; Loving, Rebekah K; Carilli, Maria; Booeshaghi, A Sina; Kawauchi, Shimako; Hallgrímsdóttir, Ingileif B; Williams, Brian A; MacGregor, Grant R; Pachter, Lior; Wold, Barbara J; Mortazavi, Ali

Dogme: a nextflow pipeline for reprocessing nanopore RNA and DNA modifications

Dogme:用于纳米孔RNA和DNA修饰再处理的下一代流程

Abdollahzadeh, Elnaz; Mortazavi, Ali

Hybrid crosses reveal a cell-type-specific landscape of mouse regulatory variation

杂交实验揭示了小鼠调控变异的细胞类型特异性图谱

Weber, Ryan; Carilli, Maria; Rebboah, Elisabeth; Filimban, Ghassan; Liang, Heidi Yahan; Trout, Diane; Duffield, Margaret; Mahdipoor, Parvin; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Mojaverzargar, Romina; Kawauchi, Shimako; Williams, Brian A; MacGregor, Grant R; Wold, Barbara J; Pachter, Lior; Hallgrimsdottir, Ingileif B; Mortazavi, Ali

Peptide signaling in the paraventricular thalamus contributes to disrupted adult reward behaviors after early-life adversity

室旁丘脑中的肽信号传导会导致早期生活逆境后成年期奖赏行为紊乱。

Floriou-Servou, Amalia; Weber, Ryan; Chen, Yuncai; Kooiker, Cassandra L; Tetzlaff, Madison R; Birnie, Matthew T; Short, Annabel K; Roberts, Roshae; Liang, Heidi Y; Gantuz, Magdalena; Hardy, Mason; Mortazavi, Ali; Baram, Tallie Z

Adaptive response to electrical pulse stimulation is impaired in FSHD myotubes by DUX4 gene network activation

DUX4基因网络激活会损害FSHD肌管对电脉冲刺激的适应性反应。

Kong, Xiangduo; Rajagopal, Ananya; Foust, Skylar Renee; Osorio, Jonovan; Mortazavi, Ali; Grosberg, Anna; Yokomori, Kyoko

Probing the roles of developmentally active neurons, in early-life adversity induced disruptions of adult behaviors

探究发育活跃神经元在早期生活逆境引发的成年行为紊乱中的作用

Weber, Ryan; Mortazavi, Ali; Baram, Tallie Z; Floriou-Servou, Amalia

Dogme: A nextflow pipeline for reprocessing nanopore RNA and DNA modifications

Dogme:用于纳米孔RNA和DNA修饰再处理的下一代流程

Abdollahzadeh, Elnaz; Mortazavi, Ali

Long-read sequencing transcriptome quantification with lr-kallisto

利用 lr-kallisto 进行长读长测序转录组定量分析

Loving, Rebekah K; Sullivan, Delaney K; Booeshagi, A Sina; Reese, Fairlie; Rebboah, Elisabeth; Sakr, Jasmine; Rezaie, Narges; Liang, Heidi Y; Filimban, Ghassan; Kawauchi, Shimako; Oakes, Conrad; Trout, Diane; Williams, Brian A; MacGregor, Grant; Wold, Barbara J; Mortazavi, Ali; Pachter, Lior

Genome-wide analysis of FSHD cell lines using Nanopore sequencing reveals allele-specific differences at DUX4 target genes and complex repeats

利用纳米孔测序对 FSHD 细胞系进行全基因组分析,揭示了 DUX4 靶基因和复杂重复序列的等位基因特异性差异。

Sakr, Jasmine Shaaban; Kong, Xiangduo; Mojgani, Negar; Taghizadeh, Erisa; Abdollahzadeh, Elnaz; Yokomori, Kyoko; Mortazavi, Ali

Determining gene specificity from multivariate single-cell RNA sequencing data

利用多变量单细胞RNA测序数据确定基因特异性

Swarna, Nikhila P; Booeshaghi, A Sina; Rebboah, Elisabeth; Gordon, M Grace; Kathail, Pooja; Li, Taibo; Alvarez, Marcus; Ye, Chun Jimmie; Wold, Barbara; Mortazavi, Ali; Pachter, Lior