日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

对8个实验室和野生小鼠品系的8种组织进行系统性的细胞类型解析转录组分析,揭示了整体和局部表达变异。

Rebboah, Elisabeth; Weber, Ryan; Abdollahzadeh, Elnaz; Swarna, Nikhila; Sullivan, Delaney K; Trout, Diane; Reese, Fairlie; Liang, Heidi Yahan; Filimban, Ghassan; Mahdipoor, Parvin; Duffield, Margaret; Mojaverzargar, Romina; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Zhang, Haoran; Loving, Rebekah K; Carilli, Maria; Booeshaghi, A Sina; Kawauchi, Shimako; Hallgrímsdóttir, Ingileif B; Williams, Brian A; MacGregor, Grant R; Pachter, Lior; Wold, Barbara J; Mortazavi, Ali

Hybrid crosses reveal a cell-type-specific landscape of mouse regulatory variation

杂交实验揭示了小鼠调控变异的细胞类型特异性图谱

Weber, Ryan; Carilli, Maria; Rebboah, Elisabeth; Filimban, Ghassan; Liang, Heidi Yahan; Trout, Diane; Duffield, Margaret; Mahdipoor, Parvin; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Mojaverzargar, Romina; Kawauchi, Shimako; Williams, Brian A; MacGregor, Grant R; Wold, Barbara J; Pachter, Lior; Hallgrimsdottir, Ingileif B; Mortazavi, Ali

The Rayleigh Quotient and Contrastive Principal Component Analysis II

瑞利商和对比主成分分析 II

Jackson, Kayla; Carilli, Maria; Pachter, Lior

Uniform pre-processing of bacterial single-cell RNA-seq

细菌单细胞RNA测序的统一预处理

Oakes, Conrad; Beilinson, Vera; McFall-Ngai, Margaret J; Pachter, Lior

Accurate quantification of nascent and mature RNAs from single-cell and single-nucleus RNA-seq

对单细胞和单核RNA测序数据中新生和成熟RNA进行精确定量

Sullivan, Delaney K; Hjörleifsson, Kristján Eldjárn; Swarna, Nikhila P; Oakes, Conrad; Holley, Guillaume; Melsted, Páll; Pachter, Lior

Trajectory inference from single-cell genomics data with a process time model

利用过程时间模型从单细胞基因组学数据中推断轨迹

Fang, Meichen; Gorin, Gennady; Pachter, Lior

Long-read sequencing transcriptome quantification with lr-kallisto

利用 lr-kallisto 进行长读长测序转录组定量分析

Loving, Rebekah K; Sullivan, Delaney K; Booeshagi, A Sina; Reese, Fairlie; Rebboah, Elisabeth; Sakr, Jasmine; Rezaie, Narges; Liang, Heidi Y; Filimban, Ghassan; Kawauchi, Shimako; Oakes, Conrad; Trout, Diane; Williams, Brian A; MacGregor, Grant; Wold, Barbara J; Mortazavi, Ali; Pachter, Lior

Characterization of spatial homogeneous regions in tissues with concordex

利用 Concordex 对组织中的空间均质区域进行表征

Jackson, Kayla C; Booeshaghi, A Sina; Gálvez-Merchán, Ángel; Moses, Lambda; Chari, Tara; Kim, Alexandra; Hosten-Mittermaier, Orhan; Pachter, Lior

Pseudoassembly of k-mers

k-mer的伪组装

Sullivan, Delaney K; Boffelli, Mayuko; Pachter, Lior

Geospatially informed representation of spatial genomics data with SpatialFeatureExperiment

利用 SpatialFeatureExperiment 对空间基因组学数据进行地理空间信息表示

Moses, Lambda; Huseynov, Alik; Rich, Joseph M; Pachter, Lior