日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

ChemEmbed: a deep learning framework for metabolite identification using enhanced MS/MS data and multidimensional molecular embeddings

ChemEmbed:一种利用增强型MS/MS数据和多维分子嵌入进行代谢物鉴定的深度学习框架

Faizan-Khan, Muhammad; Giné, Roger; Badia, Josep M; Pérez-Ribera, Maribel; Ruiz-Botella, Manuel; Junza, Alexandra; Capellades, Jordi; Pérez-López, Iván; Xing, Shipei; Patan, Abubaker; Brugnara, Laura; Novials, Anna; Servitja, Joan-Marc; Vinaixa, Maria; Dorrestein, Pieter C; Sales-Pardo, Marta; Guimerà, Roger; Yanes, Oscar

MS/MS Mass Spectrometry Filtering Tree for Bile Acid Regio- and Stereoisomer Annotation

用于胆汁酸区域异构体和立体异构体注释的MS/MS质谱过滤树

Mohanty, Ipsita; Xing, Shipei; Castillo, Vanessa; Agongo, Julius; Patan, Abubaker; El Abiead, Yasin; Mannochio-Russo, Helena; Gonçalves Nunes, Wilhan D; Zemlin, Jasmine; Mizrahi, Itzhak; Siegel, Dionicio; Wang, Mingxun; Hagey, Lee R; Dorrestein, Pieter C

A searchable metadata network graph for microbiome metabolomics

微生物组代谢组学的可搜索元数据网络图

Charron-Lamoureux, Vincent; Xing, Shipei; Patan, Abubaker; Walker, Corinn; Monter, Ricardo-Almada; Abiead, Yasin El; Zhao, Haoqi Nina; Patel, Lucas; Weng, Yuhan; Gonzalez, Antonio; Ackermann, Gail; Deleray, Victoria; Gandhi, Vishant; Mohanty, Ipsita; Caraballo-Rodriguez, Andres Mauricio; Kvitne, Kine Eide; Zuffa, Simone; Norman, Annabelle; Martin, Anthony; Chin, Loryn; Paz-Gonzalez, Rocio; Sala-Climent, Marta; Suryawinata, Nadia; Zemlin, Jasmine; Gouda, Harsha; Hu, Zhewen; Norton, Grant; Rajkumar, Prajit; Molina, Anthony Ja; Bergstrom, Jaclyn; Pinner, Monae; Giddings, Sadie; Aron, Allegra T; Liang, Liang; Dahesh, Samira; Lamichhane, Santosh; Reilly, Erin R; Nizet, Victor; Skrip, Anna; Lukowski, April L; Shore, Selene F H; Ghoshal, Subhomitra; Engevik, Melinda A; Horvath, Thomas D; Renwick, Simone; Agongo, Julius; Marco, Maria L; Mazmanian, Sarkis K; Wang, Mingxun; Yang, Heejung; McDonald, Daniel; Guma, Monica; Stegmann, Evi; Hernandez Perez, Naybel; Stincone, Paolo; Kemen, Eric; Pakkir Shah, Abzer Kelminal; Bode, Lars; Petras, Daniel; Siegel, Dionicio; Raffatellu, Manuela; Patterson, Andrew D; Devkota, Suzanne; Jinich, Adrian; Knight, Rob; Zengler, Karsten; Dorrestein, Pieter C

Antibiotic Exposure Through Human Milk Influences the Infant Gut Microbiome

通过母乳接触抗生素会影响婴儿肠道微生物群。

Kvitne, Kine Eide; Zuffa, Simone; Charron-Lamoureux, Vincent; Patan, Abubaker; Agongo, Julius; Cai, Jiaxi; Deleray, Victoria; El Abiead, Yasin; Xing, Shipei; Zemlin, Jasmine; Thomas, Sydney; Nelson, Megan R; Gant, Abigail; Ghadishah, Angelique; Lam, Anny; Ho, Benjamin; Momper, Jeremiah D; Suhandynata, Raymond T; Bertrand, Kerri; Knight, Rob; Chambers, Christina; Dorrestein, Pieter C; Tsunoda, Shirley M

Navigating the conjugated metabolome

探索结合代谢组

Xing, Shipei; Patan, Abubaker; Agongo, Julius; Gouda, Harsha; Charron-Lamoureux, Vincent; El Abiead, Yasin; Hu, Zhewen; Zhao, Haoqi Nina; Mohanty, Ipsita; Zemlin, Jasmine; Nunes, Wilhan Donizete Gonçalves; Burnett, Lindsey A; Wang, Mingxun; Siegel, Dionicio; Dorrestein, Pieter C

Community Curation of Microbial Metabolites Enables Biological Insights of Metabolomics Data

社区对微生物代谢物的管理有助于深入了解代谢组学数据的生物学意义

Mannochio-Russo, Helena; Gonçalves Nunes, Wilhan D; Xing, Shipei; de Oliveira, Fernanda; Caraballo-Rodríguez, Andrés Mauricio; Gomes, Paulo Wender Portal; Charron-Lamoureux, Vincent; Agongo, Julius; Avalon, Nicole E; Bui, Tammy; Cancelada, Lucia; Chevrette, Marc G; Cumsille, Andrés; de Araújo, Moysés B; De Graeve, Marilyn; Deleray, Victoria; Donia, Mohamed S; Dzveta, Mutsawashe B; El Abiead, Yasin; Ellis, Ronald J; Franklin, Donald Jr; Garg, Neha; Gouda, Harsha; Djande, Claude Y Hamany; Hiskia, Anastasia; Ho, Benjamin N; Hughes, Chambers C; Hwang, Sunghoon; Iliakopoulou, Sofia; Iudicello, Jennifer E; Jarmusch, Alan K; Kaloudis, Triantafyllos; Koester, Irina; Konkel, Robert; Koolen, Hector H F; Kvitne, Kine Eide; La Rosa, Sabina Leanti; Lam, Anny; Lamichhane, Santosh; Lephatsi, Motseoa; Letendre, Scott; Magyari, Sarolt; Mazur-Marzec, Hanna; McDonald, Daniel; Mohanty, Ipsita; Monge-Loría, Mónica; Moore, David J; Veiga, Thiago André Moura; Mulaudzi, Musiwalo S; Nephali, Lerato; Nguyen, Griffith; Orságh, Martin; Patan, Abubaker; Pluskal, Tomáš; Pope, Phillip B; de Medeiros, Lívia Soman; Stincone, Paolo; Tekel, Andrej; Thomas, Sydney; Torres, Ralph R; Tsunoda, Shirley M; Tugizimana, Fidele; van Faassen, Martijn; Vasquez-Castro, Felipe; Vitale, Giovanni A; Wagner, Berenike C; Wang, Crystal X; Zervou, Sevasti-Kiriaki; Zhao, Haoqi Nina; Zuffa, Simone; Petras, Daniel; McCall, Laura-Isobel; Knight, Rob; Wang, Mingxun; Dorrestein, Pieter C

Pan-Metabolomics Repository Mapping of the Carnitine Landscape

肉碱谱的泛代谢组学数据库映射

Mannochio-Russo, Helena; Ferreira, Patrick C; Kvitne, Kine Eide; Patan, Abubaker; Deleray, Victoria; Agongo, Julius; Gouda, Harsha; Gonçalves Nunes, Wilhan D; Xing, Shipei; Zemlin, Jasmine; van Faassen, Martijn; Reilly, Erin R; Koo, Imhoi; Patterson, Andrew D; Tsunoda, Shirley M; Wang, Mingxun; Siegel, Dionicio; Burnett, Lindsey A; Dorrestein, Pieter C

Unlocking the Bile Acid Universe: Advanced Workflows and a Multidimensional Library of 280 Unique Species.

揭开胆汁酸世界的神秘面纱:先进的工作流程和包含 280 种独特物种的多维库。

Zhang Guozhi, Vincent Emily C, Disselkoen Sadie M, Dodds James N, DuVal-Smith Quentin, Patan Abubaker, Mohanty Ipsita, Deleray Victoria, Zhang Jian, Thiessen Paul A, Bolton Evan E, Schymanski Emma L, Dorrestein Pieter C, Theriot Casey M, Baker Erin S

Environmental and maternal imprints on infant gut metabolic development.

环境和母体因素对婴儿肠道代谢发育的影响。

Kvitne Kine Eide, Allaband Celeste, Onuora Jennifer C, Perry Daniela, Zuffa Simone, Patel Lucas, Charron-Lamoureux Vincent, Mohanty Ipsita, Sejane Kristija, Patan Abubaker, Mahmud Abdullah Al, Ahmed Tahmeed, Bassani Diego G, González Antonio, Hamer Davidson H, Haque Rashidul, Ho Benjamin, Hossain Md Iqbal, Islam Mohammad Shahidul, McDonald Daniel, Pell Lisa G, Qamar Huma, Roth Daniel E, Saha Samir, Shah Prakesh S, Siddiqui Md Muniruzzaman, Sarker Shafiqul Alam, Sultana Shamima, Thomas Sydney, Burnett Lindsey A, Tsunoda Shirley M, Bode Lars, Dorrestein Pieter C, Knight Rob

A guide to reverse metabolomics-a framework for big data discovery strategy

反向代谢组学指南——大数据发现策略框架

Charron-Lamoureux, Vincent; Mannochio-Russo, Helena; Lamichhane, Santosh; Xing, Shipei; Patan, Abubaker; Portal Gomes, Paulo Wender; Rajkumar, Prajit; Deleray, Victoria; Caraballo-Rodríguez, Andrés Mauricio; Chua, Kee Voon; Lee, Lye Siang; Liu, Zhao; Ching, Jianhong; Wang, Mingxun; Dorrestein, Pieter C