日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Severus 利用长读长测序技术检测癌症基因组中的体细胞结构变异和复杂重排。

Keskus, Ayse G; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S; Paten, Benedict; Kolmogorov, Mikhail

Haplotype-resolved genome assemblies of BJ and IMR-90 human fibroblast cell lines reveal extensive structural variation and enable reanalysis of historical sequencing data

BJ 和 IMR-90 人类成纤维细胞系的单倍型解析基因组组装揭示了广泛的结构变异,并能够对历史测序数据进行重新分析。

Ranallo-Benavidez, T Rhyker; Hao, Yue; Volpe, Emilia; Jehangir, Maryam; Fukushima, Noelle; Stephens, Zachary D; Mbegbu, Ogechukwu; Ungaro, Matteo T; Reiman, Rebecca; Molnar, Jessica; Murphy, Danyael; Paredes, Dorothy Marie; Wong, Shukmei; Karaniuk, Kara; Buchholtz, Stephanie; Kocher, Jean-Pierre; Keats, Jonathan; Machiela, Mitchell J; Kolmogorov, Mikhail; Paten, Benedict; Giunta, Simona; Barthel, Floris P

Lancet2: Improved and accelerated somatic variant calling with joint multi-sample local assembly graphs

Lancet2:利用联合多样本局部组装图改进和加速体细胞变异检测

Musunuri, Rajeeva Lochan; Zhu, Bryan; Clarke, Wayne E; Hooper, William; Chu, Timothy; Shelton, Jennifer; Corvelo, André; Chung, Dickson; Sundar, Shreya; Novak, Adam M; Paten, Benedict; Zody, Michael C; Robine, Nicolas; Narzisi, Giuseppe

Lossless Pangenome Indexing Using Tag Arrays

利用标签阵列进行无损泛基因组索引

Eskandar, Parsa; Paten, Benedict; Sirén, Jouni

The complete genome of the KOLF2.1J reference iPSC line

KOLF2.1J参考iPSC系的完整基因组

Jerez, Pilar Alvarez; Rhie, Arang; Kim, Juhyun; Hebbar, Prajna; Nag, Sagorika; Antipov, Dmitry; Koren, Sergey; Lara, Erika; Beilina, Alexandra; Hansen, Nancy F; Arber, Charles; Zulueta, Jimena; Crea, Peter Wild; Patel, Dhairya; Hickey, Glenn; Waltz, Brian; Malik, Laksh; Skarnes, William C; Reed, Xylena; Genner, Rylee; Daida, Kensuke; Pantazis, Caroline B; Grenn, Francis; Nalls, Mike A; Billingsley, Kimberley; Fossati, Valentina; Wray, Selina; Ward, Michael; Ryten, Mina; Singleton, Andrew B; Cookson, Mark R; Jain, Miten; Paten, Benedict; Phillippy, Adam M; Blauwendraat, Cornelis

A Complete Genome for the Common Marmoset

普通狨猴的完整基因组

Hebbar, Prajna; Potapova, Tamara; Loucks, Hailey; Ray, Karina; Rodrigues, Murillo F; Ryabov, Fedor; Malukiewicz, Joanna; Yoo, DongAhn; de Lima, Leonardo; Haber, Annat; Kumar, Sonal; Banerjee, Swati; Borchers, Matthew; Garcia, Gage H; Gardner, Joshua; Hachem, Stephanie; Heath, Harrison; Ha, Seung Kwon; Mastoras, Mira; McNulty, Brandy; Menendez, Julian; Munson, Katherine M; Pal, Karol; Park, JungEun; Ploesch, Simon; Roos, Christian; Seligmann, William E; Shepelev, Valery; Spruce, Catrina; Violich, Ivo; Walter, Lutz; Makova, Kateryna D; Thathiah, Amantha; Rizzo, Stacey J Sukoff; Silva, Afonso C; Carter, Gregory W; Miga, Karen H; Eichler, Evan E; Conrad, Donald F; Gerton, Jennifer L; Alexandrov, Ivan; Paten, Benedict

Evaluating genome assemblies with HMM-Flagger

使用 HMM-Flagger 评估基因组组装

Asri, Mobin; Eizenga, Jordan M; Hebbar, Prajna; Real, Taylor D; Lucas, Julian; Loucks, Hailey; Calicchio, Alessandro; Diekhans, Mark; Eichler, Evan E; Salama, Sofie; Miga, Karen H; Paten, Benedict

Complex genetic variation in nearly complete human genomes

近乎完整的人类基因组中存在复杂的遗传变异

Logsdon, Glennis A; Ebert, Peter; Audano, Peter A; Loftus, Mark; Porubsky, David; Ebler, Jana; Yilmaz, Feyza; Hallast, Pille; Prodanov, Timofey; Yoo, DongAhn; Paisie, Carolyn A; Harvey, William T; Zhao, Xuefang; Martino, Gianni V; Henglin, Mir; Munson, Katherine M; Rabbani, Keon; Chin, Chen-Shan; Gu, Bida; Ashraf, Hufsah; Scholz, Stephan; Austine-Orimoloye, Olanrewaju; Balachandran, Parithi; Bonder, Marc Jan; Cheng, Haoyu; Chong, Zechen; Crabtree, Jonathan; Gerstein, Mark; Guethlein, Lisbeth A; Hasenfeld, Patrick; Hickey, Glenn; Hoekzema, Kendra; Hunt, Sarah E; Jensen, Matthew; Jiang, Yunzhe; Koren, Sergey; Kwon, Youngjun; Li, Chong; Li, Heng; Li, Jiaqi; Norman, Paul J; Oshima, Keisuke K; Paten, Benedict; Phillippy, Adam M; Pollock, Nicholas R; Rausch, Tobias; Rautiainen, Mikko; Song, Yuwei; Söylev, Arda; Sulovari, Arvis; Surapaneni, Likhitha; Tsapalou, Vasiliki; Zhou, Weichen; Zhou, Ying; Zhu, Qihui; Zody, Michael C; Mills, Ryan E; Devine, Scott E; Shi, Xinghua; Talkowski, Michael E; Chaisson, Mark J P; Dilthey, Alexander T; Konkel, Miriam K; Korbel, Jan O; Lee, Charles; Beck, Christine R; Eichler, Evan E; Marschall, Tobias

Complete sequencing of ape genomes

猿类基因组的完全测序

Yoo, DongAhn; Rhie, Arang; Hebbar, Prajna; Antonacci, Francesca; Logsdon, Glennis A; Solar, Steven J; Antipov, Dmitry; Pickett, Brandon D; Safonova, Yana; Montinaro, Francesco; Luo, Yanting; Malukiewicz, Joanna; Storer, Jessica M; Lin, Jiadong; Sequeira, Abigail N; Mangan, Riley J; Hickey, Glenn; Monfort Anez, Graciela; Balachandran, Parithi; Bankevich, Anton; Beck, Christine R; Biddanda, Arjun; Borchers, Matthew; Bouffard, Gerard G; Brannan, Emry; Brooks, Shelise Y; Carbone, Lucia; Carrel, Laura; Chan, Agnes P; Crawford, Juyun; Diekhans, Mark; Engelbrecht, Eric; Feschotte, Cedric; Formenti, Giulio; Garcia, Gage H; de Gennaro, Luciana; Gilbert, David; Green, Richard E; Guarracino, Andrea; Gupta, Ishaan; Haddad, Diana; Han, Junmin; Harris, Robert S; Hartley, Gabrielle A; Harvey, William T; Hiller, Michael; Hoekzema, Kendra; Houck, Marlys L; Jeong, Hyeonsoo; Kamali, Kaivan; Kellis, Manolis; Kille, Bryce; Lee, Chul; Lee, Youngho; Lees, William; Lewis, Alexandra P; Li, Qiuhui; Loftus, Mark; Loh, Yong Hwee Eddie; Loucks, Hailey; Ma, Jian; Mao, Yafei; Martinez, Juan F I; Masterson, Patrick; McCoy, Rajiv C; McGrath, Barbara; McKinney, Sean; Meyer, Britta S; Miga, Karen H; Mohanty, Saswat K; Munson, Katherine M; Pal, Karol; Pennell, Matt; Pevzner, Pavel A; Porubsky, David; Potapova, Tamara; Ringeling, Francisca R; Rocha, Joana L; Ryder, Oliver A; Sacco, Samuel; Saha, Swati; Sasaki, Takayo; Schatz, Michael C; Schork, Nicholas J; Shanks, Cole; Smeds, Linnéa; Son, Dongmin R; Steiner, Cynthia; Sweeten, Alexander P; Tassia, Michael G; Thibaud-Nissen, Françoise; Torres-González, Edmundo; Trivedi, Mihir; Wei, Wenjie; Wertz, Julie; Yang, Muyu; Zhang, Panpan; Zhang, Shilong; Zhang, Yang; Zhang, Zhenmiao; Zhao, Sarah A; Zhu, Yixin; Jarvis, Erich D; Gerton, Jennifer L; Rivas-González, Iker; Paten, Benedict; Szpiech, Zachary A; Huber, Christian D; Lenz, Tobias L; Konkel, Miriam K; Yi, Soojin V; Canzar, Stefan; Watson, Corey T; Sudmant, Peter H; Molloy, Erin; Garrison, Erik; Lowe, Craig B; Ventura, Mario; O'Neill, Rachel J; Koren, Sergey; Makova, Kateryna D; Phillippy, Adam M; Eichler, Evan E

Author Correction: Complex genetic variation in nearly complete human genomes

作者更正:近乎完整的人类基因组中存在复杂的遗传变异

Logsdon, Glennis A; Ebert, Peter; Audano, Peter A; Loftus, Mark; Porubsky, David; Ebler, Jana; Yilmaz, Feyza; Hallast, Pille; Prodanov, Timofey; Yoo, DongAhn; Paisie, Carolyn A; Harvey, William T; Zhao, Xuefang; Martino, Gianni V; Henglin, Mir; Munson, Katherine M; Rabbani, Keon; Chin, Chen-Shan; Gu, Bida; Ashraf, Hufsah; Scholz, Stephan; Austine-Orimoloye, Olanrewaju; Balachandran, Parithi; Bonder, Marc Jan; Cheng, Haoyu; Chong, Zechen; Crabtree, Jonathan; Gerstein, Mark; Guethlein, Lisbeth A; Hasenfeld, Patrick; Hickey, Glenn; Hoekzema, Kendra; Hunt, Sarah E; Jensen, Matthew; Jiang, Yunzhe; Koren, Sergey; Kwon, Youngjun; Li, Chong; Li, Heng; Li, Jiaqi; Norman, Paul J; Oshima, Keisuke K; Paten, Benedict; Phillippy, Adam M; Pollock, Nicholas R; Rausch, Tobias; Rautiainen, Mikko; Song, Yuwei; Söylev, Arda; Sulovari, Arvis; Surapaneni, Likhitha; Tsapalou, Vasiliki; Zhou, Weichen; Zhou, Ying; Zhu, Qihui; Zody, Michael C; Mills, Ryan E; Devine, Scott E; Shi, Xinghua; Talkowski, Michael E; Chaisson, Mark J P; Dilthey, Alexander T; Konkel, Miriam K; Korbel, Jan O; Lee, Charles; Beck, Christine R; Eichler, Evan E; Marschall, Tobias