日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Massively parallel characterization of transcriptional regulatory elements

转录调控元件的大规模并行表征

Agarwal, Vikram; Inoue, Fumitaka; Schubach, Max; Penzar, Dmitry; Martin, Beth K; Dash, Pyaree Mohan; Keukeleire, Pia; Zhang, Zicong; Sohota, Ajuni; Zhao, Jingjing; Georgakopoulos-Soares, Ilias; Noble, William S; Yardımcı, Galip Gürkan; Kulakovskiy, Ivan V; Kircher, Martin; Shendure, Jay; Ahituv, Nadav

GENA-LM: a family of open-source foundational DNA language models for long sequences

GENA-LM:一系列用于长序列的开源基础DNA语言模型

Fishman, Veniamin; Kuratov, Yuri; Shmelev, Aleksei; Petrov, Maxim; Penzar, Dmitry; Shepelin, Denis; Chekanov, Nikolay; Kardymon, Olga; Burtsev, Mikhail

Cross-platform motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors

跨平台基序发现和基准测试,以探索研究较少的人类转录因子的结合特异性

Vorontsov, Ilya E; Kozin, Ivan; Abramov, Sergey; Boytsov, Alexandr; Jolma, Arttu; Albu, Mihai; Ambrosini, Giovanna; Faltejskova, Katerina; Gralak, Antoni J; Gryzunov, Nikita; Inukai, Sachi; Kolmykov, Semyon; Kravchenko, Pavel; Kribelbauer-Swietek, Judith F; Laverty, Kaitlin U; Nozdrin, Vladimir; Patel, Zain M; Penzar, Dmitry; Plescher, Marie-Luise; Pour, Sara E; Razavi, Rozita; Yang, Ally W H; Yevshin, Ivan; Zinkevich, Arsenii; Weirauch, Matthew T; Bucher, Philipp; Deplancke, Bart; Fornes, Oriol; Grau, Jan; Grosse, Ivo; Kolpakov, Fedor A; Makeev, Vsevolod J; Hughes, Timothy R; Kulakovskiy, Ivan V

Inferring binding specificities of human transcription factors with the wisdom of crowds

利用群体智慧推断人类转录因子的结合特异性

Gryzunov, Nikita; Penzar, Dmitry; Kamenets, Vasilii; Vyaltsev, Valery; Kozin, Ivan; Eliseeva, Irina A; Nozdrin, Vladimir; Vorontsov, Ilya E; Bushuev, Sergey; Strekalovskikh, Vadim; Zinkevich, Arsenii; Andrews, Gregory; Bedarew, Matwej; Blass, Ido; Frolov, Dmitry; Lariushina, Iuliia; Moore, Jill; Orenstein, Yaron; Roev, German; Salimov, Danil; Shimshoviz, Noam; Tziony, Ido; Weng, Zhiping; Bucher, Philipp; Deplancke, Bart; Fornes, Oriol; Grau, Jan; Grosse, Ivo; Jolma, Arttu; Kolpakov, Fedor A; Makeev, Vsevolod J; Hughes, Timothy R; Kulakovskiy, Ivan V

GAME: Genomic API for Model Evaluation

游戏:用于模型评估的基因组API

Luthra, Ishika; Priyadarshi, Satyam; Guo, Rui; Mahieu, Lukas; Kempynck, Niklas; Dooley, Damion; Penzar, Dmitry; Vorontsov, Ilya; Sheng, Yilun; Tu, Xinming; Klie, Adam; Drusinsky, Shiron; Floren, Alexander; Armand, Ethan; Alasoo, Kaur; Seelig, Georg; Tewhey, Ryan; Koo, Peter; Agarwal, Vikram; Gosai, Sager; Pinello, Luca; White, Michael A; Lal, Avantika; Zeitlinger, Julia; Pollard, Katherine S; Libbrecht, Maxwell; Carter, Hannah; Mostafavi, Sara; Kulakovskiy, Ivan; Hsiao, Will; Aerts, Stein; Zhou, Jian; de Boer, Carl G

PhyloBench: A Benchmark for Evaluating Phylogenetic Programs

PhyloBench:用于评估系统发育程序的基准

Spirin, Sergey; Sigorskikh, Andrey; Efremov, Aleksei; Penzar, Dmitry; Karyagina, Anna

Cross-platform DNA motif discovery and benchmarking to explore binding specificities of poorly studied human transcription factors

跨平台DNA基序发现和基准测试,以探索研究较少的人类转录因子的结合特异性

Vorontsov, Ilya E; Kozin, Ivan; Abramov, Sergey; Boytsov, Alexandr; Jolma, Arttu; Albu, Mihai; Ambrosini, Giovanna; Faltejskova, Katerina; Gralak, Antoni J; Gryzunov, Nikita; Inukai, Sachi; Kolmykov, Semyon; Kravchenko, Pavel; Kribelbauer-Swietek, Judith F; Laverty, Kaitlin U; Nozdrin, Vladimir; Patel, Zain M; Penzar, Dmitry; Plescher, Marie-Luise; Pour, Sara E; Razavi, Rozita; Yang, Ally W H; Yevshin, Ivan; Zinkevich, Arsenii; Weirauch, Matthew T; Bucher, Philipp; Deplancke, Bart; Fornes, Oriol; Grau, Jan; Grosse, Ivo; Kolpakov, Fedor A; Makeev, Vsevolod J; Hughes, Timothy R; Kulakovskiy, Ivan V

Evaluation and optimization of sequence-based gene regulatory deep learning models

基于序列的基因调控深度学习模型的评估与优化

Rafi, Abdul Muntakim; Nogina, Daria; Penzar, Dmitry; Lee, Dohoon; Lee, Danyeong; Kim, Nayeon; Kim, Sangyeup; Kim, Dohyeon; Shin, Yeojin; Kwak, Il-Youp; Meshcheryakov, Georgy; Lando, Andrey; Zinkevich, Arsenii; Kim, Byeong-Chan; Lee, Juhyun; Kang, Taein; Vaishnav, Eeshit Dhaval; Yadollahpour, Payman; Kim, Sun; Albrecht, Jake; Regev, Aviv; Gong, Wuming; Kulakovskiy, Ivan V; Meyer, Pablo; de Boer, Carl

Ribonanza: deep learning of RNA structure through dual crowdsourcing

Ribonanza:通过双重众包进行 RNA 结构的深度学习

Shujun He, Rui Huang, Jill Townley, Rachael C Kretsch, Thomas G Karagianes, David B T Cox, Hamish Blair, Dmitry Penzar, Valeriy Vyaltsev, Elizaveta Aristova, Arsenii Zinkevich, Artemy Bakulin, Hoyeol Sohn, Daniel Krstevski, Takaaki Fukui, Fumiya Tatematsu, Yusuke Uchida, Donghoon Jang, Jun Seong Lee

Investigation of the Role of PUFA Metabolism in Breast Cancer Using a Rank-Based Random Forest Algorithm

利用基于排序的随机森林算法研究多不饱和脂肪酸代谢在乳腺癌中的作用

Guryleva, Mariia V; Penzar, Dmitry D; Chistyakov, Dmitry V; Mironov, Andrey A; Favorov, Alexander V; Sergeeva, Marina G