日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Novel Knotted Solenoid fold with order-shifted coil arrangement leads to nontrivial 3(1) topology

具有移序线圈排列的新型打结螺线管折叠结构导致非平凡的 3(1) 拓扑结构

Sikora, Maciej; Mozajew, Mariusz; Sikorska, Julia A; da Silva, Fernando Bruno; Perlinska, Agata P; Kluza, Anna; Niewieczerzal, Szymon; Lukaszewicz, Maciej; Wielgus-Kutrowska, Beata; Stachurska-Korzeniowska, Karolina; Jackson, Sophie E; Sulkowska, Joanna I

AlphaKnot 2.0: a web server for the visualization of proteins' knotting and a database of knotted AlphaFold-predicted models

AlphaKnot 2.0:一个用于可视化蛋白质打结的Web服务器以及一个包含AlphaFold预测的打结模型的数据库

Rubach, Pawel; Sikora, Maciej; Jarmolinska, Aleksandra I; Perlinska, Agata P; Sulkowska, Joanna I

Knot or not? Identifying unknotted proteins in knotted families with sequence-based Machine Learning model

是否形成结?利用基于序列的机器学习模型识别形成结的蛋白质家族中的非结蛋白质

Sikora, Maciej; Klimentova, Eva; Uchal, Dawid; Sramkova, Denisa; Perlinska, Agata P; Nguyen, Mai Lan; Korpacz, Marta; Malinowska, Roksana; Nowakowski, Szymon; Rubach, Pawel; Simecek, Petr; Sulkowska, Joanna I

AlphaFold predicts novel human proteins with knots

AlphaFold预测具有结状结构的新型人类蛋白质

Perlinska, Agata P; Niemyska, Wanda H; Gren, Bartosz A; Bukowicki, Marek; Nowakowski, Szymon; Rubach, Pawel; Sulkowska, Joanna I

Nucleolar Essential Protein 1 (Nep1): Elucidation of enzymatic catalysis mechanism by molecular dynamics simulation and quantum mechanics study

核仁必需蛋白1 (Nep1):通过分子动力学模拟和量子力学研究阐明其酶促催化机制

Jedrzejewski, Mateusz; Belza, Barbara; Lewandowska, Iwona; Sadlej, Marta; Perlinska, Agata P; Augustyniak, Rafal; Christian, Thomas; Hou, Ya-Ming; Kalek, Marcin; Sulkowska, Joanna I

Are there double knots in proteins? Prediction and in vitro verification based on TrmD-Tm1570 fusion from C. nitroreducens

蛋白质中是否存在双结?基于硝化还原梭菌TrmD-Tm1570融合蛋白的预测和体外验证

Perlinska, Agata P; Nguyen, Mai Lan; Pilla, Smita P; Staszor, Emilia; Lewandowska, Iwona; Bernat, Agata; Purta, Elżbieta; Augustyniak, Rafal; Bujnicki, Janusz M; Sulkowska, Joanna I

Conservation of knotted and slipknotted topology in transmembrane transporters

跨膜转运蛋白中打结和滑结拓扑结构的保守性

Zayats, Vasilina; Sikora, Maciej; Perlinska, Agata P; Stasiulewicz, Adam; Gren, Bartosz A; Sulkowska, Joanna I

Amino acid variants of SARS-CoV-2 papain-like protease have impact on drug binding

SARS-CoV-2木瓜蛋白酶样蛋白酶的氨基酸变体对药物结合有影响

Perlinska, Agata P; Stasiulewicz, Adam; Nguyen, Mai Lan; Swiderska, Karolina; Zmudzinski, Mikolaj; Maksymiuk, Alicja W; Drag, Marcin; Sulkowska, Joanna I

Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor

滑结型和非滑结型单价阳离子-质子反向转运蛋白均由共同祖先进化而来

Zayats, Vasilina; Perlinska, Agata P; Jarmolinska, Aleksandra I; Jastrzebski, Borys; Dunin-Horkawicz, Stanislaw; Sulkowska, Joanna I

Mg(2+)-Dependent Methyl Transfer by a Knotted Protein: A Molecular Dynamics Simulation and Quantum Mechanics Study

Mg(2+)依赖性甲基转移在打结蛋白中的应用:分子动力学模拟和量子力学研究

Perlinska, Agata P; Kalek, Marcin; Christian, Thomas; Hou, Ya-Ming; Sulkowska, Joanna I