日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Severus 利用长读长测序技术检测癌症基因组中的体细胞结构变异和复杂重排。

Keskus, Ayse G; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S; Paten, Benedict; Kolmogorov, Mikhail

Targeting the microbiome in pediatric migraine: gastrointestinal manifestations and the therapeutic role of Bifidobacterium longum

靶向肠道微生物群治疗儿童偏头痛:胃肠道表现及长双歧杆菌的治疗作用

Fan, Pi-Chuan; Chua, Huey-Huey; Lin, Chia-Ray; Lai, Tzu-Hsuan; Chiou, Lih-Chu; Lee, Wang-Tso; Chen, Huey-Ling; Ni, Yen-Hsuan

Characterization of subclonal variants in HG002 Genome in a Bottle reference material as a resource for benchmarking variant callers

对HG002 Genome in a Bottle参考材料中的亚克隆变异进行表征,作为变异检测器基准测试的资源

Daniels, Camille A; Abdulkadir, Adetola A; Cleveland, Megan H; McDaniel, Jennifer H; Jáspez, David; Rubio-Rodríguez, Luis Alberto; Muñoz-Barrera, Adrián; Lorenzo-Salazar, José Miguel; Flores, Carlos; Yoo, Byunggil; Ebrahim Sahraeian, Sayed Mohammad; Wang, Yina; Rossi, Massimiliano; Visvanath, Arun; Murray, Lisa; Chen, Wei-Ting; Catreux, Severine; Han, James; Mehio, Rami; Parnaby, Gavin; Carroll, Andrew; Chang, Pi-Chuan; Shafin, Kishwar; Cook, Daniel; Kolesnikov, Alexey; Brambrink, Lucas; Eeman Mootor, Mohammed Faizal; Patel, Yash; Yamaguchi, Takafumi N; Boutros, Paul C; Sienkiewicz, Karolina; Foox, Jonathan; Mason, Christopher E; Lajoie, Bryan R; Ruiz-Perez, Carlos A; Kruglyak, Semyon; Zook, Justin M; Olson, Nathan D

The Platinum Pedigree: a long-read benchmark for genetic variants

白金谱系:基因变异的长读长基准

Kronenberg, Zev; Nolan, Cillian; Porubsky, David; Mokveld, Tom; Rowell, William J; Lee, Sangjin; Dolzhenko, Egor; Chang, Pi-Chuan; Holt, James M; Saunders, Christopher T; Olson, Nathan D; Steely, Cody J; McGee, Sean; Guarracino, Andrea; Koundinya, Nidhi; Harvey, William T; Watkins, W Scott; Munson, Katherine M; Hoekzema, Kendra; Chua, Khi Pin; Chen, Xiao; Fanslow, Cairbre; Lambert, Christine; Dashnow, Harriet; Garrison, Erik; Smith, Joshua D; Lansdorp, Peter M; Zook, Justin M; Carroll, Andrew; Jorde, Lynn B; Neklason, Deborah W; Quinlan, Aaron R; Eichler, Evan E; Eberle, Michael A

Highly accurate assembly polishing with DeepPolisher

使用DeepPolisher进行高精度装配抛光

Mastoras, Mira; Asri, Mobin; Brambrink, Lucas; Hebbar, Prajna; Kolesnikov, Alexey; Cook, Daniel E; Nattestad, Maria; Lucas, Julian; Won, Taylor S; Chang, Pi-Chuan; Carroll, Andrew; Paten, Benedict; Shafin, Kishwar

Accurate human genome analysis with element avidity sequencing

利用元件亲和力测序进行精确的人类基因组分析

Carroll, Andrew; Kolesnikov, Alexey; Cook, Daniel E; Brambrink, Lucas; Wiseman, Kelly N; Billings, Sophie M; Kruglyak, Semyon; Lajoie, Bryan R; Zhao, Junhua; Levy, Shawn E; McLean, Cory Y; Shafin, Kishwar; Nattestad, Maria; Chang, Pi-Chuan

Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe

使用 vg Giraffe 实现快速、准确的长读和短读比对到大型泛基因组图谱。

Chang, Xian; Novak, Adam M; Eizenga, Jordan M; Sirén, Jouni; Monlong, Jean; Negi, Shloka; Andreace, Francesco; Nag, Sagorika; Kyriakidis, Konstantinos; Hickey, Glenn; Hwang, Stephen; Délot, Emmanuèle C; Carroll, Andrew; Shafin, Kishwar; Chang, Pi-Chuan; Okamoto, Faith; Paten, Benedict

Rapid, accurate long- and short-read mapping to large pangenome graphs with vg Giraffe

使用 vg Giraffe 实现快速、准确的长读和短读比对到大型泛基因组图谱。

Chang, Xian; Novak, Adam M; Eizenga, Jordan M; Sirén, Jouni; Monlong, Jean; Negi, Shloka; Andreace, Francesco; Nag, Sagorika; Kyriakidis, Konstantinos; Hickey, Glenn; Hwang, Stephen; Délot, Emmanuèle C; Carroll, Andrew; Shafin, Kishwar; Chang, Pi-Chuan; Okamoto, Faith; Paten, Benedict

The complete sequence and comparative analysis of ape sex chromosomes

猿类性染色体的完整序列及比较分析

Makova, Kateryna D; Pickett, Brandon D; Harris, Robert S; Hartley, Gabrielle A; Cechova, Monika; Pal, Karol; Nurk, Sergey; Yoo, DongAhn; Li, Qiuhui; Hebbar, Prajna; McGrath, Barbara C; Antonacci, Francesca; Aubel, Margaux; Biddanda, Arjun; Borchers, Matthew; Bornberg-Bauer, Erich; Bouffard, Gerard G; Brooks, Shelise Y; Carbone, Lucia; Carrel, Laura; Carroll, Andrew; Chang, Pi-Chuan; Chin, Chen-Shan; Cook, Daniel E; Craig, Sarah J C; de Gennaro, Luciana; Diekhans, Mark; Dutra, Amalia; Garcia, Gage H; Grady, Patrick G S; Green, Richard E; Haddad, Diana; Hallast, Pille; Harvey, William T; Hickey, Glenn; Hillis, David A; Hoyt, Savannah J; Jeong, Hyeonsoo; Kamali, Kaivan; Pond, Sergei L Kosakovsky; LaPolice, Troy M; Lee, Charles; Lewis, Alexandra P; Loh, Yong-Hwee E; Masterson, Patrick; McGarvey, Kelly M; McCoy, Rajiv C; Medvedev, Paul; Miga, Karen H; Munson, Katherine M; Pak, Evgenia; Paten, Benedict; Pinto, Brendan J; Potapova, Tamara; Rhie, Arang; Rocha, Joana L; Ryabov, Fedor; Ryder, Oliver A; Sacco, Samuel; Shafin, Kishwar; Shepelev, Valery A; Slon, Viviane; Solar, Steven J; Storer, Jessica M; Sudmant, Peter H; Sweetalana; Sweeten, Alex; Tassia, Michael G; Thibaud-Nissen, Françoise; Ventura, Mario; Wilson, Melissa A; Young, Alice C; Zeng, Huiqing; Zhang, Xinru; Szpiech, Zachary A; Huber, Christian D; Gerton, Jennifer L; Yi, Soojin V; Schatz, Michael C; Alexandrov, Ivan A; Koren, Sergey; O'Neill, Rachel J; Eichler, Evan E; Phillippy, Adam M

Personalized pangenome references

个性化泛基因组参考

Sirén, Jouni; Eskandar, Parsa; Ungaro, Matteo Tommaso; Hickey, Glenn; Eizenga, Jordan M; Novak, Adam M; Chang, Xian; Chang, Pi-Chuan; Kolmogorov, Mikhail; Carroll, Andrew; Monlong, Jean; Paten, Benedict