日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Severus 利用长读长测序技术检测癌症基因组中的体细胞结构变异和复杂重排。

Keskus, Ayse G; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S; Paten, Benedict; Kolmogorov, Mikhail

Evaluation of Hi-C Sequencing for Detection of Gene Fusions in Hematologic and Solid Tumor Pediatric Cancer Samples

Hi-C测序在检测血液肿瘤和实体瘤儿童癌症样本中的基因融合方面的应用评价

Schmitt, Anthony D; Sikkink, Kristin; Ahmed, Atif A; Melnyk, Shadi; Reid, Derek; Van Meter, Logan; Guest, Erin M; Lansdon, Lisa A; Pastinen, Tomi; Pushel, Irina; Yoo, Byunggil; Farooqi, Midhat S

Evaluation of Hi-C sequencing for the detection of gene fusions in hematologic and solid pediatric cancer samples

评估Hi-C测序在血液系统和实体儿童癌症样本中检测基因融合的能力

Schmitt, Anthony D; Sikkink, Kristin; Ahmed, Atif A; Melnyk, Shadi; Reid, Derek; Van Meter, Logan; Guest, Erin M; Lansdon, Lisa A; Pastinen, Tomi; Pushel, Irina; Yoo, Byunggil; Farooqi, Midhat S

Successful classification of clinical pediatric leukemia genetic subtypes via structural variant detection using HiFi long-read sequencing

利用高保真长读长测序技术进行结构变异检测,成功实现临床儿童白血病基因亚型的分类

Lansdon, Lisa A; Yoo, Byunggil; Keskus, Ayse; Pushel, Irina; Bi, Chengpeng; Ahmad, Tanveer; Bryant, Asher; Walter, Adam; Gibson, Margaret; Rindler, Mary; Li, Weijie; Habeebu, Sultan M; Cooley, Linda D; Herriges, John; Repnikova, Elena; Zhang, Lei; August, Keith J; Flatt, Terrie G; Gamis, Alan S; Guest, Erin M; Hays, J Allyson; Hetherington, Maxine; Lewing, Karen; Pastinen, Tomi; Kolmogorov, Mikhail; Farooqi, Midhat S

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads.

Severus:利用长读长技术准确检测和表征肿瘤基因组中的体细胞结构变异。

Keskus Ayse, Bryant Asher, Ahmad Tanveer, Yoo Byunggil, Aganezov Sergey, Goretsky Anton, Donmez Ataberk, Lansdon Lisa A, Rodriguez Isabel, Park Jimin, Liu Yuelin, Cui Xiwen, Gardner Joshua, McNulty Brandy, Sacco Samuel, Shetty Jyoti, Zhao Yongmei, Tran Bao, Narzisi Giuseppe, Helland Adrienne, Cook Daniel E, Chang Pi-Chuan, Kolesnikov Alexey, Carroll Andrew, Molloy Erin K, Pushel Irina, Guest Erin, Pastinen Tomi, Shafin Kishwar, Miga Karen H, Malikic Salem, Day Chi-Ping, Robine Nicolas, Sahinalp Cenk, Dean Michael, Farooqi Midhat S, Paten Benedict, Kolmogorov Mikhail

DeepSomatic: Accurate somatic small variant discovery for multiple sequencing technologies.

DeepSomatic:适用于多种测序技术的精确体细胞小变异发现。

Park Jimin, Cook Daniel E, Chang Pi-Chuan, Kolesnikov Alexey, Brambrink Lucas, Mier Juan Carlos, Gardner Joshua, McNulty Brandy, Sacco Samuel, Keskus Ayse, Bryant Asher, Ahmad Tanveer, Shetty Jyoti, Zhao Yongmei, Tran Bao, Narzisi Giuseppe, Helland Adrienne, Yoo Byunggil, Pushel Irina, Lansdon Lisa A, Bi Chengpeng, Walter Adam, Gibson Margaret, Pastinen Tomi, Farooqi Midhat S, Robine Nicolas, Miga Karen H, Carroll Andrew, Kolmogorov Mikhail, Paten Benedict, Shafin Kishwar

Predicting neuroblastoma using developmental signals and a logic-based model

利用发育信号和基于逻辑的模型预测神经母细胞瘤

Jennifer C Kasemeier-Kulesa ,Santiago Schnell ,Thomas Woolley ,Jennifer A Spengler ,Jason A Morrison ,Mary C McKinney ,Irina Pushel ,Lauren A Wolfe ,Paul M Kulesa

HOXA1 and TALE proteins display cross-regulatory interactions and form a combinatorial binding code on HOXA1 targets.

HOXA1 和 TALE 蛋白表现出交叉调控相互作用,并在 HOXA1 靶标上形成组合结合密码

De Kumar Bony, Parker Hugo J, Paulson Ariel, Parrish Mark E, Pushel Irina, Singh Narendra Pratap, Zhang Ying, Slaughter Brian D, Unruh Jay R, Florens Laurence, Zeitlinger Julia, Krumlauf Robb

Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo

基于定量扰动的基因表达分析预测了果蝇早期胚胎中的增强子活性

Sayal, Rupinder; Dresch, Jacqueline M; Pushel, Irina; Taylor, Benjamin R; Arnosti, David N

Integrated stability and activity control of the Drosophila Rbf1 retinoblastoma protein.

果蝇 Rbf1 视网膜母细胞瘤蛋白的稳定性和活性控制

Zhang Liang, Wei Yiliang, Pushel Irina, Heinze Karolin, Elenbaas Jared, Henry R William, Arnosti David N