日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

connectomeDB2025: a rigorously curated, multi-species resource of experimentally supported ligand-receptor interactions

connectomeDB2025:一个经过严格筛选、涵盖多种物种的、经实验验证的配体-受体相互作用资源库

Liu, Peiwen; Maezono, Sakura Eri B; Lin, Weitao; Yeow, Yen; Liu, Ya-Yu; Hisham, Yasmin; Hou, Rui; Ramilowski, Jordan A; Forrest, Alistair R R

Annotation of nuclear lncRNAs based on chromatin interactions

基于染色质相互作用的核内lncRNA注释

Agrawal, Saumya; Buyan, Andrey; Severin, Jessica; Koido, Masaru; Alam, Tanvir; Abugessaisa, Imad; Chang, Howard Y; Dostie, Josée; Itoh, Masayoshi; Kere, Juha; Kondo, Naoto; Li, Yunjing; Makeev, Vsevolod J; Mendez, Mickaël; Okazaki, Yasushi; Ramilowski, Jordan A; Sigorskikh, Andrey I; Strug, Lisa J; Yagi, Ken; Yasuzawa, Kayoko; Yip, Chi Wai; Hon, Chung Chau; Hoffman, Michael M; Terao, Chikashi; Kulakovskiy, Ivan V; Kasukawa, Takeya; Shin, Jay W; Carninci, Piero; de Hoon, Michiel J L

Establishment of experimental salivary gland cancer models using organoid culture and patient-derived xenografting

利用类器官培养和患者来源的异种移植建立实验性唾液腺癌模型

Aizawa, Yoshihiro; Takada, Kentaro; Aoyama, Jun; Sano, Daisuke; Yamanaka, Shoji; Seki, Masahide; Kuze, Yuta; Ramilowski, Jordan A; Okuda, Ryo; Ueno, Yasuharu; Nojima, Yusuke; Inayama, Yoshiaki; Hatakeyama, Hiromitsu; Hatano, Takashi; Takahashi, Hideaki; Nishimura, Goshi; Fujii, Satoshi; Suzuki, Yutaka; Taniguchi, Hideki; Oridate, Nobuhiko

ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data

ZENBU-Reports:一个用于交互式可视化和传播基因组规模数据的图形化网络门户构建器

Severin, Jessica; Agrawal, Saumya; Ramilowski, Jordan A; Deviatiiarov, Ruslan; Shin, Jay W; Carninci, Piero; de Hoon, Michiel

Single-cell transcriptomes underscore genetically distinct tumor characteristics and microenvironment for hereditary kidney cancers

单细胞转录组强调遗传性肾癌的遗传上不同的肿瘤特征和微环境

Ryosuke Jikuya, Koichi Murakami, Akira Nishiyama, Ikuma Kato, Mitsuko Furuya, Jun Nakabayashi, Jordan A Ramilowski, Haruka Hamanoue, Kazuhiro Maejima, Masashi Fujita, Taku Mitome, Shinji Ohtake, Go Noguchi, Sachi Kawaura, Hisakazu Odaka, Takashi Kawahara, Mitsuru Komeya, Risa Shinoki, Daiki Ueno, Hi

Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network

基于序列的深度神经网络可预测微卫星上广泛的转录起始现象

Grapotte, Mathys; Saraswat, Manu; Bessière, Chloé; Menichelli, Christophe; Ramilowski, Jordan A; Severin, Jessica; Hayashizaki, Yoshihide; Itoh, Masayoshi; Tagami, Michihira; Murata, Mitsuyoshi; Kojima-Ishiyama, Miki; Noma, Shohei; Noguchi, Shuhei; Kasukawa, Takeya; Hasegawa, Akira; Suzuki, Harukazu; Nishiyori-Sueki, Hiromi; Frith, Martin C; Chatelain, Clément; Carninci, Piero; de Hoon, Michiel J L; Wasserman, Wyeth W; Bréhélin, Laurent; Lecellier, Charles-Henri

FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs

FANTOM项目进入第20年:扩展转录组图谱和非编码RNA的功能注释

Abugessaisa, Imad; Ramilowski, Jordan A; Lizio, Marina; Severin, Jesicca; Hasegawa, Akira; Harshbarger, Jayson; Kondo, Atsushi; Noguchi, Shuhei; Yip, Chi Wai; Ooi, Jasmine Li Ching; Tagami, Michihira; Hori, Fumi; Agrawal, Saumya; Hon, Chung Chau; Cardon, Melissa; Ikeda, Shuya; Ono, Hiromasa; Bono, Hidemasa; Kato, Masaki; Hashimoto, Kosuke; Bonetti, Alessandro; Kato, Masaki; Kobayashi, Norio; Shin, Jay; de Hoon, Michiel; Hayashizaki, Yoshihide; Carninci, Piero; Kawaji, Hideya; Kasukawa, Takeya

The choice of negative control antisense oligonucleotides dramatically impacts downstream analysis depending on the cellular background

根据细胞背景,阴性对照反义寡核苷酸的选择会显著影响下游分析

Luca Ducoli #, Saumya Agrawal #, Chung-Chau Hon, Jordan A Ramilowski, Eliane Sibler, Michihira Tagami, Masayoshi Itoh, Naoto Kondo, Imad Abugessaisa, Akira Hasegawa, Takeya Kasukawa, Harukazu Suzuki, Piero Carninci, Jay W Shin, Michiel J L de Hoon, Michael Detmar

Predicting cell-to-cell communication networks using NATMI

利用NATMI预测细胞间通信网络

Hou, Rui; Denisenko, Elena; Ong, Huan Ting; Ramilowski, Jordan A; Forrest, Alistair R R

Comparative transcriptomics of primary cells in vertebrates

脊椎动物原代细胞的比较转录组学

Alam, Tanvir; Agrawal, Saumya; Severin, Jessica; Young, Robert S; Andersson, Robin; Arner, Erik; Hasegawa, Akira; Lizio, Marina; Ramilowski, Jordan A; Abugessaisa, Imad; Ishizu, Yuri; Noma, Shohei; Tarui, Hiroshi; Taylor, Martin S; Lassmann, Timo; Itoh, Masayoshi; Kasukawa, Takeya; Kawaji, Hideya; Marchionni, Luigi; Sheng, Guojun; R R Forrest, Alistair; Khachigian, Levon M; Hayashizaki, Yoshihide; Carninci, Piero; de Hoon, Michiel J L