日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Simultaneous detection of pathogens and antimicrobial resistance genes with the open source, cloud-based, CZ ID platform

利用开源的云端 CZ ID 平台同时检测病原体和抗菌素耐药基因

Lu, Dan; Kalantar, Katrina L; Glascock, Abigail L; Chu, Victoria T; Guerrero, Estella S; Bernick, Nina; Butcher, Xochitl; Ewing, Kirsty; Fahsbender, Elizabeth; Holmes, Olivia; Hoops, Erin; Jones, Ann E; Lim, Ryan; McCanny, Suzette; Reynoso, Lucia; Rosario, Karyna; Tang, Jennifer; Valenzuela, Omar; Mourani, Peter M; Pickering, Amy J; Raphenya, Amogelang R; Alcock, Brian P; McArthur, Andrew G; Langelier, Charles R

CARPDM: cost-effective antibiotic resistome profiling of metagenomic samples using targeted enrichment

CARPDM:利用靶向富集技术对宏基因组样本进行经济高效的抗生素耐药组分析

Hackenberger, Dirk; Imtiaz, Hamna; Raphenya, Amogelang R; Alcock, Brian P; Poinar, Hendrik N; Wright, Gerard D; McArthur, Andrew G

PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testing and training

PHA4GE 质量控制上下文数据标签:用于共享已知质量问题的公共卫生序列数据集的标准化注释,以促进测试和训练。

Griffiths, Emma J; Mendes, Inês; Maguire, Finlay; Guthrie, Jennifer L; Wee, Bryan A; Schmedes, Sarah; Holt, Kathryn; Yadav, Chanchal; Cameron, Rhiannon; Barclay, Charlotte; Dooley, Damion; MacCannell, Duncan; Chindelevitch, Leonid; Karsch-Mizrachi, Ilene; Waheed, Zahra; Katz, Lee; Petit Iii, Robert; Dave, Mugdha; Oluniyi, Paul; Nasar, Muhammad Ibtisam; Raphenya, Amogelang; Hsiao, William W L; Timme, Ruth E

SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL), a Snakemate workflow for rapid and bulk analysis of Illumina sequencing of SARS-CoV-2 genomes

SARS-CoV-2 Illumina GeNome Assembly Line (SIGNAL),一种用于快速批量分析 SARS-CoV-2 基因组 Illumina 测序数据的 Snakemate 工作流程

Nasir, Jalees A; Maguire, Finlay; Smith, Kendrick M; Panousis, Emily M; Baker, Sheridan J C; Aftanas, Patryk; Raphenya, Amogelang R; Alcock, Brian P; Maan, Hassaan; Knox, Natalie C; Banerjee, Arinjay; Mossman, Karen; Wang, Bo; Simpson, Jared T; Kozak, Robert A; Mubareka, Samira; McArthur, Andrew G

CARD 2023: expanded curation, support for machine learning, and resistome prediction at the Comprehensive Antibiotic Resistance Database

CARD 2023:综合抗生素耐药性数据库扩展了数据管理、机器学习支持和耐药组预测功能。

Alcock, Brian P; Huynh, William; Chalil, Romeo; Smith, Keaton W; Raphenya, Amogelang R; Wlodarski, Mateusz A; Edalatmand, Arman; Petkau, Aaron; Syed, Sohaib A; Tsang, Kara K; Baker, Sheridan J C; Dave, Mugdha; McCarthy, Madeline C; Mukiri, Karyn M; Nasir, Jalees A; Golbon, Bahar; Imtiaz, Hamna; Jiang, Xingjian; Kaur, Komal; Kwong, Megan; Liang, Zi Cheng; Niu, Keyu C; Shan, Prabakar; Yang, Jasmine Y J; Gray, Kristen L; Hoad, Gemma R; Jia, Baofeng; Bhando, Timsy; Carfrae, Lindsey A; Farha, Maya A; French, Shawn; Gordzevich, Rodion; Rachwalski, Kenneth; Tu, Megan M; Bordeleau, Emily; Dooley, Damion; Griffiths, Emma; Zubyk, Haley L; Brown, Eric D; Maguire, Finlay; Beiko, Robert G; Hsiao, William W L; Brinkman, Fiona S L; Van Domselaar, Gary; McArthur, Andrew G

Macrophage AMPK β1 activation by PF-06409577 reduces the inflammatory response, cholesterol synthesis, and atherosclerosis in mice

PF-06409577 激活巨噬细胞 AMPK β1 可减少小鼠的炎症反应、胆固醇合成和动脉粥样硬化

Emily A Day, Logan K Townsend, Sonia Rehal, Battsetseg Batchuluun, Dongdong Wang, Marisa R Morrow, Rachel Lu, Lucie Lundenberg, Jessie H Lu, Eric M Desjardins, Tyler K T Smith, Amogelang R Raphenya, Andrew G McArthur, Morgan D Fullerton, Gregory R Steinberg

Putting everything in its place: using the INSDC compliant Pathogen Data Object Model to better structure genomic data submitted for public health applications

理顺一切:使用符合 INSDC 标准的病原体数据对象模型来更好地构建提交给公共卫生应用的基因组数据

Timme, Ruth E; Karsch-Mizrachi, Ilene; Waheed, Zahra; Arita, Masanori; MacCannell, Duncan; Maguire, Finlay; Petit Iii, Robert; Page, Andrew J; Mendes, Catarina Inês; Nasar, Muhammad Ibtisam; Oluniyi, Paul; Tyler, Andrea D; Raphenya, Amogelang R; Guthrie, Jennifer L; Olawoye, Idowu; Rinck, Gabriele; O'Cathail, Colman; Lees, John; Cochrane, Guy; Cummins, Carla; Brister, J Rodney; Klimke, William; Feldgarden, Michael; Griffiths, Emma

A standardized nomenclature for resistance-modifying agents in the Comprehensive Antibiotic Resistance Database

综合抗生素耐药性数据库中耐药性修饰剂的标准化命名法

Smith, Keaton W; Alcock, Brian P; French, Shawn; Farha, Maya A; Raphenya, Amogelang R; Brown, Eric D; McArthur, Andrew G

Capturing the antibiotic resistome of preterm infants reveals new benefits of probiotic supplementation

对早产儿抗生素耐药组的分析揭示了益生菌补充剂的新益处

Guitor, Allison K; Yousuf, Efrah I; Raphenya, Amogelang R; Hutton, Eileen K; Morrison, Katherine M; McArthur, Andrew G; Wright, Gerard D; Stearns, Jennifer C

Metformin-induced reductions in tumor growth involves modulation of the gut microbiome

二甲双胍抑制肿瘤生长的机制涉及肠道微生物群的调节。

Lindsay A Broadfield ,Amna Saigal ,Jake C Szamosi ,Joanne A Hammill ,Ksenia Bezverbnaya ,Dongdong Wang ,Jaya Gautam ,Evangelia E Tsakiridis ,Fiorella Di Pastena ,Jamie McNicol ,Jianhan Wu ,Saad Syed ,James S V Lally ,Amogelang R Raphenya ,Marie-Jose Blouin ,Michael Pollak ,Andrea Sacconi ,Giovanni Blandino ,Andrew G McArthur ,Jonathan D Schertzer ,Michael G Surette ,Stephen M Collins ,Jonathan L Bramson ,Paola Muti ,Theodoros Tsakiridis ,Gregory R Steinberg