日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

对8个实验室和野生小鼠品系的8种组织进行系统性的细胞类型解析转录组分析,揭示了整体和局部表达变异。

Rebboah, Elisabeth; Weber, Ryan; Abdollahzadeh, Elnaz; Swarna, Nikhila; Sullivan, Delaney K; Trout, Diane; Reese, Fairlie; Liang, Heidi Yahan; Filimban, Ghassan; Mahdipoor, Parvin; Duffield, Margaret; Mojaverzargar, Romina; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Zhang, Haoran; Loving, Rebekah K; Carilli, Maria; Booeshaghi, A Sina; Kawauchi, Shimako; Hallgrímsdóttir, Ingileif B; Williams, Brian A; MacGregor, Grant R; Pachter, Lior; Wold, Barbara J; Mortazavi, Ali

Long-read sequencing transcriptome quantification with lr-kallisto

利用 lr-kallisto 进行长读长测序转录组定量

Loving, Rebekah K; Sullivan, Delaney K; Reese, Fairlie; Rebboah, Elisabeth; Sakr, Jasmine; Rezaie, Narges; Liang, Heidi Y; Filimban, Ghassan; Kawauchi, Shimako; Booeshaghi, A Sina; Melsted, Páll; Oakes, Conrad; Trout, Diane; Williams, Brian A; MacGregor, Grant R; Wold, Barbara J; Mortazavi, Ali; Pachter, Lior

Determining gene specificity from multivariate single-cell RNA sequencing data

利用多变量单细胞RNA测序数据确定基因特异性

Swarna, Nikhila P; Booeshaghi, A Sina; Rebboah, Elisabeth; Gordon, M Grace; Kathail, Pooja; Li, Taibo; Alvarez, Marcus; Ye, Chun Jimmie; Wold, Barbara; Mortazavi, Ali; Pachter, Lior

Long-read sequencing transcriptome quantification with lr-kallisto

使用 lr-kallisto 进行长读测序转录组定量

Rebekah K Loving, Delaney K Sullivan, Fairlie Reese, Elisabeth Rebboah, Jasmine Sakr, Narges Rezaie, Heidi Y Liang, Ghassan Filimban, Shimako Kawauchi, Conrad Oakes, Diane Trout, Brian A Williams, Grant MacGregor, Barbara J Wold, Ali Mortazavi, Lior Pachter

The ENCODE mouse postnatal developmental time course identifies regulatory programs of cell types and cell states

ENCODE 小鼠出生后发育时间过程识别细胞类型和细胞状态的调控程序

Elisabeth Rebboah, Narges Rezaie, Brian A Williams, Annika K Weimer, Minyi Shi, Xinqiong Yang, Heidi Yahan Liang, Louise A Dionne, Fairlie Reese, Diane Trout, Jennifer Jou, Ingrid Youngworth, Laura Reinholdt, Samuel Morabito, Michael P Snyder, Barbara J Wold, Ali Mortazavi

Identification of robust cellular programs using reproducible LDA that impact sex-specific disease progression in different genotypes of a mouse model of AD

使用可重复的 LDA 识别影响 AD 小鼠模型不同基因型中性别特异性疾病进展的稳健细胞程序

Narges Rezaie, Elisabeth Rebboah, Brian A Williams, Heidi Yahan Liang, Fairlie Reese, Gabriela Balderrama-Gutierrez, Louise A Dionne, Laura Reinholdt, Diane Trout, Barbara J Wold, Ali Mortazavi

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity

ENCODE4长读长RNA测序数据集揭示了转录本结构多样性的不同类别

Reese, Fairlie; Williams, Brian; Balderrama-Gutierrez, Gabriela; Wyman, Dana; Çelik, Muhammed Hasan; Rebboah, Elisabeth; Rezaie, Narges; Trout, Diane; Razavi-Mohseni, Milad; Jiang, Yunzhe; Borsari, Beatrice; Morabito, Samuel; Liang, Heidi Yahan; McGill, Cassandra J; Rahmanian, Sorena; Sakr, Jasmine; Jiang, Shan; Zeng, Weihua; Carvalho, Klebea; Weimer, Annika K; Dionne, Louise A; McShane, Ariel; Bedi, Karan; Elhajjajy, Shaimae I; Upchurch, Sean; Jou, Jennifer; Youngworth, Ingrid; Gabdank, Idan; Sud, Paul; Jolanki, Otto; Strattan, J Seth; Kagda, Meenakshi S; Snyder, Michael P; Hitz, Ben C; Moore, Jill E; Weng, Zhiping; Bennett, David; Reinholdt, Laura; Ljungman, Mats; Beer, Michael A; Gerstein, Mark B; Pachter, Lior; Guigó, Roderic; Wold, Barbara J; Mortazavi, Ali

Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq

利用 LR-Split-seq 技术在单细胞分辨率下绘制和建模差异 RNA 亚型表达的基因组基础

Elisabeth Rebboah # ,Fairlie Reese # ,Katherine Williams ,Gabriela Balderrama-Gutierrez ,Cassandra McGill ,Diane Trout ,Isaryhia Rodriguez ,Heidi Liang ,Barbara J Wold ,Ali Mortazavi

Brain Sciences - An Open Access Journal

脑科学——开放获取期刊

Pieraut, Simon; Gounko, Natalia; Sando, Richard 3rd; Dang, Westley; Rebboah, Elisabeth; Panda, Satchidananda; Madisen, Linda; Zeng, Hongkui; Maximov, Anton; Barrionuevo, Germán