Rigden Daniel J相关文献与解析，生知库 | 链接生命科学的每一步

m6AConquer: a consistently quantified and orthogonally validated database for the N6-methyladenosine (m6A) epitranscriptome

m6AConquer：一个经过一致量化和正交验证的N6-甲基腺苷（m6A）表观转录组数据库

期刊:Nucleic Acids Research

影响因子:13.1

doi:10.1093/nar/gkaf1204

Zhao, Xichen; Ye, Haokai; He, Dan; Liu, Hongxi; Li, Tenglong; Rigden, Daniel J; Wei, Zhen

Physical Implausibility of Carbohydrate Ligands in Results of Deep Learning-Based Cofolding Methods

基于深度学习的共折叠方法结果中碳水化合物配体的物理不合理性

期刊:Journal of Chemical Information and Modeling

影响因子:5.3

doi:10.1021/acs.jcim.5c03075

Luthfi, Muhammad; Simpkin, Adam J; Elliott, Luc G; Sompornpisut, Pornthep; Rigden, Daniel J

发表日期：2026

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AlphaFold-driven discovery of oxysterol-binding protein-related protein-phosphoinositide 3-, 4-, and 5-phosphatase interactions using new generation confidence scores

利用新一代置信度评分，通过 AlphaFold 驱动的氧固醇结合蛋白相关蛋白-磷脂酰肌醇 3-、4- 和 5-磷酸酶相互作用的发现

期刊:Protein Science

影响因子:5.2

doi:10.1002/pro.70572

Dall'Armellina, Filippo; Urbé, Sylvie; Rigden, Daniel J

发表日期：2026

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DirectRM: integrated detection of landscape and crosstalk between multiple RNA modifications using direct RNA sequencing

DirectRM：利用直接RNA测序技术整合检测多种RNA修饰之间的相互作用及其分布情况

期刊:Nature Communications

影响因子:15.7

doi:10.1038/s41467-025-64495-8

Zhang, Yuxin; Wu, Yuecheng; Ma, Jiongming; Wu, Yiyu; Li, Liying; Wang, Haozhe; Jia, Guifang; Rigden, Daniel J; Meng, Jia; Huang, Daiyun; Chen, Kunqi

Sequencing

发表日期：2025

文献求助收藏

The 2025 Nucleic Acids Research database issue and the online molecular biology database collection

2025 年核酸研究数据库特刊和在线分子生物学数据库合集

期刊:Nucleic Acids Research

影响因子:13.1

doi:10.1093/nar/gkae1220

Rigden, Daniel J; Fernández, Xosé M

发表日期：2025

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Bacterial polysaccharide lyase family 33: Specificity from an evolutionarily conserved binding tunnel

细菌多糖裂解酶33家族：进化保守的结合通道赋予其特异性

期刊:Proceedings of the National Academy of Sciences of the United States of America

影响因子:9.1

doi:10.1073/pnas.2421623122

Loiodice, Mélanie; Drula, Elodie; McIver, Zak; Antonyuk, Svetlana; Baslé, Arnaud; Lima, Marcelo; Yates, Edwin A; Byrne, Dominic P; Coughlan, Jamie; Leech, Andrew; Mesdaghi, Shahram; Rigden, Daniel J; Drouillard, Sophie; Helbert, William; Henrissat, Bernard; Terrapon, Nicolas; Wright, Gareth S A; Couturier, Marie; Cartmell, Alan

微生物学

发表日期：2025

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Statistical modeling of single-cell epitranscriptomics enabled trajectory and regulatory inference of RNA methylation

单细胞表观转录组学的统计建模能够推断RNA甲基化的轨迹和调控机制

期刊:Cell Genomics

影响因子:9

doi:10.1016/j.xgen.2024.100702

Wang, Haozhe; Wang, Yue; Zhou, Jingxian; Song, Bowen; Tu, Gang; Nguyen, Anh; Su, Jionglong; Coenen, Frans; Wei, Zhi; Rigden, Daniel J; Meng, Jia

AlphaFold 2, but not AlphaFold 3, predicts confident but unrealistic β-solenoid structures for repeat proteins

AlphaFold 2（而非 AlphaFold 3）能够预测重复蛋白的 β-螺线管结构，但预测结果虽然可靠，却不切实际。

期刊:Computational and Structural Biotechnology Journal

影响因子:4.1

doi:10.1016/j.csbj.2025.01.016

Pratt, Olivia S; Elliott, Luc G; Haon, Margaux; Mesdaghi, Shahram; Price, Rebecca M; Simpkin, Adam J; Rigden, Daniel J

发表日期：2025

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The promise of AlphaFold for gene structure annotation

AlphaFold在基因结构注释方面的应用前景

The 2026 Nucleic Acids Research database issue and the online molecular biology database collection

2026 年核酸研究数据库特刊和在线分子生物学数据库合集

m6AConquer: a consistently quantified and orthogonally validated database for the N6-methyladenosine (m6A) epitranscriptome

m6AConquer：一个经过一致量化和正交验证的N6-甲基腺苷（m6A）表观转录组数据库

Physical Implausibility of Carbohydrate Ligands in Results of Deep Learning-Based Cofolding Methods

基于深度学习的共折叠方法结果中碳水化合物配体的物理不合理性

AlphaFold-driven discovery of oxysterol-binding protein-related protein-phosphoinositide 3-, 4-, and 5-phosphatase interactions using new generation confidence scores

利用新一代置信度评分，通过 AlphaFold 驱动的氧固醇结合蛋白相关蛋白-磷脂酰肌醇 3-、4- 和 5-磷酸酶相互作用的发现

DirectRM: integrated detection of landscape and crosstalk between multiple RNA modifications using direct RNA sequencing

DirectRM：利用直接RNA测序技术整合检测多种RNA修饰之间的相互作用及其分布情况

The 2025 Nucleic Acids Research database issue and the online molecular biology database collection

2025 年核酸研究数据库特刊和在线分子生物学数据库合集

Bacterial polysaccharide lyase family 33: Specificity from an evolutionarily conserved binding tunnel

细菌多糖裂解酶33家族：进化保守的结合通道赋予其特异性

Statistical modeling of single-cell epitranscriptomics enabled trajectory and regulatory inference of RNA methylation

单细胞表观转录组学的统计建模能够推断RNA甲基化的轨迹和调控机制

AlphaFold 2, but not AlphaFold 3, predicts confident but unrealistic β-solenoid structures for repeat proteins

AlphaFold 2（而非 AlphaFold 3）能够预测重复蛋白的 β-螺线管结构，但预测结果虽然可靠，却不切实际。