日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

The E3-ome gene-centric compendium reveals the human E3 ligase landscape.

以 E3 连接酶组为中心的基因汇编揭示了人类 E3 连接酶的全貌。

Chua Ngee Kiat, González-Robles Tania J, Reddington Cameron J, Dudley-Fraser Jane, Birkinshaw Richard W, Han Jiru, Solano Ashleigh, Wong Soon Wei, Kochańczyk Tomasz, Peter Joshua J, Nakasone Mark A, Aust Florian, Munro Jacob, Tong Yeh Huei, Iskander Julie, Abeysekera Waruni, Garnham Alex, Huckstep Hannah, Ritchie Matthew E, Wertz Ingrid, Hymowitz Sarah, Kumar Sharad, Conaway Ron C, Privé Gilbert G, Bullock Alex N, Babon Jeffrey J, Klevit Rachel E, Lorenz Sonja, Ciulli Alessio, Fischer Eric S, Thomä Nicolas H, Nowak Radosław P, Schulman Brenda A, Rapé Michael, Rittinger Katrin, Pagan Julia K, Bahlo Melanie, Mackay Joel P, Mace Peter D, Lima Christopher D, Hay Ronald T, Komander David, Lechtenberg Bernhard C, Joazeiro Claudio A P, Pagano Michele, Hofmann Kay, Feltham Rebecca

A comprehensive evaluation of long-read de novo transcriptome assembly

对长读长从头转录组组装的全面评估

Yan, Feng; Baldoni, Pedro L; Lancaster, James; Ritchie, Matthew E; Lewsey, Mathew G; Gouil, Quentin; Davidson, Nadia M

Alpseq: an open-source workflow to turbocharge nanobody discovery with high-throughput sequencing

Alpseq:一种利用高通量测序加速纳米抗体发现的开源工作流程

Zeglinski, Kathleen; Schuster, Jakob; Sa, Jaison D; Adair, Amy; Deng, Jing; Pymm, Phillip; Ritchie, Matthew E; Bowden, Rory; Tham, Wai-Hong; Gouil, Quentin

Benchmarking spatial transcriptomics technologies with the multi-sample SpatialBenchVisium dataset

利用多样本 SpatialBenchVisium 数据集对空间转录组学技术进行基准测试

Du, Mei R M; Wang, Changqing; Law, Charity W; Amann-Zalcenstein, Daniela; Anttila, Casey J A; Ling, Ling; Hickey, Peter F; Sargeant, Callum J; Chen, Yunshun; Ioannidis, Lisa J; Rajasekhar, Pradeep; Yip, Raymond K H; Rogers, Kelly L; Hansen, Diana S; Bowden, Rory; Ritchie, Matthew E

TIRE-seq simplifies transcriptomics via integrated RNA capture and library preparation.

TIRE-seq 通过整合 RNA 捕获和文库制备,简化了转录组学分析

O'Keeffe Piper, Nouri Yasmin, Saw Hui Shi, Moore Zachery, Baldwin Tracey M, Olechnowicz Sam W Z, Jabbari Jafar S, Squire David McG, Leslie Stephen, Wang Changqing, You Yupei, Ritchie Matthew E, Cross Ryan S, Jenkins Misty R, Audiger Cindy, Naik Shalin H, Whittle James R, Freytag Saskia, Best Sarah A, Hickey Peter F, Amann-Zalcenstein Daniela, Bowden Rory, Brown Daniel V

stPipe: a flexible and streamlined R/Bioconductor pipeline for preprocessing sequencing-based spatial transcriptomics data

stPipe:一个灵活且精简的 R/Bioconductor 流程,用于预处理基于测序的空间转录组学数据

Xu, Yang; Sargeant, Callum J; You, Yue; You, Yupei; Su, Shian; Wang, Changqing; Tian, Luyi; Chen, Yunshun; Ritchie, Matthew E

Systematic comparison of sequencing-based spatial transcriptomic methods

对基于测序的空间转录组学方法进行系统比较

You, Yue; Fu, Yuting; Li, Lanxiang; Zhang, Zhongmin; Jia, Shikai; Lu, Shihong; Ren, Wenle; Liu, Yifang; Xu, Yang; Liu, Xiaojing; Jiang, Fuqing; Peng, Guangdun; Sampath Kumar, Abhishek; Ritchie, Matthew E; Liu, Xiaodong; Tian, Luyi

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

对用于转录本鉴定和定量的长读长RNA测序方法进行系统评估

Pardo-Palacios, Francisco J; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Sílvia; Williams, Brian; Loveland, Jane E; De María, Maite; Adams, Matthew S; Balderrama-Gutierrez, Gabriela; Behera, Amit K; Gonzalez Martinez, Jose M; Hunt, Toby; Lagarde, Julien; Liang, Cindy E; Li, Haoran; Meade, Marcus Jerryd; Moraga Amador, David A; Prjibelski, Andrey D; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M; Çelik, Muhammed Hasan; Chen, Ying; Du, Mei R M; Felton, Colette; Göke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E; Sim, Andre D; Tang, Alison D; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y; Yang, Chen; Barnes, If; Berry, Andrew E; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M; Ferrández-Peral, Luis; Garcia-Reyero, Natàlia; Götz, Stefan; Hernández-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomás, Jorge; Mudge, Jonathan M; Panayotova, Nedka G; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A; Carninci, Piero; Denslow, Nancy D; Guigó, Roderic; Hunter, Margaret E; Maehr, Rene; Shen, Yin; Tilgner, Hagen U; Wold, Barbara J; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N

Venetoclax dose escalation rapidly activates a BAFF/BCL-2 survival axis in chronic lymphocytic leukemia

维奈托克剂量递增可迅速激活慢性淋巴细胞白血病中的 BAFF/BCL-2 生存轴。

Luo, Meng-Xiao; Tan, Tania; Trussart, Marie; Poch, Annika; Nguyen, Thi Minh Hanh; Speed, Terence P; Hicks, Damien G; Bandala-Sanchez, Esther; Peng, Hongke; Chappaz, Stéphane; Slade, Charlotte; Utzschneider, Daniel T; Koldej, Rachel M; Ritchie, David; Strasser, Andreas; Thijssen, Rachel; Ritchie, Matthew E; Tam, Constantine S; Lindeman, Geoffrey J; Huang, David C S; Lew, Thomas E; Anderson, Mary Ann; Roberts, Andrew W; Teh, Charis E; Gray, Daniel H D

Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR

消除定量不确定性可以有效地利用 edgeR 评估差异转录本表达。

Baldoni, Pedro L; Chen, Yunshun; Hediyeh-Zadeh, Soroor; Liao, Yang; Dong, Xueyi; Ritchie, Matthew E; Shi, Wei; Smyth, Gordon K