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Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos

Rainbow-Seq：将细胞谱系追踪与植入前胚胎单细胞RNA测序相结合

期刊:iScience

影响因子:4.1

doi:10.1016/j.isci.2018.08.009

Biase, Fernando H; Wu, Qiuyang; Calandrelli, Riccardo; Rivas-Astroza, Marcelo; Zhou, Shuigeng; Chen, Zhen; Zhong, Sheng

Systematic Mapping of RNA-Chromatin Interactions In Vivo

体内RNA-染色质相互作用的系统性定位

期刊:Current Biology

影响因子:7.5

doi:10.1016/j.cub.2017.01.011

Sridhar, Bharat; Rivas-Astroza, Marcelo; Nguyen, Tri C; Chen, Weizhong; Yan, Zhangming; Cao, Xiaoyi; Hebert, Lucie; Zhong, Sheng

发表日期：2017

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SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination

SMARCAD1 通过与组蛋白瓜氨酸化相互作用来促进幼稚多能性的调节

期刊:Cell Reports

影响因子:7.5

doi:10.1016/j.celrep.2017.02.070

Shu Xiao, Jia Lu, Bharat Sridhar, Xiaoyi Cao, Pengfei Yu, Tianyi Zhao, Chieh-Chun Chen, Darina McDee, Laura Sloofman, Yang Wang, Marcelo Rivas-Astroza, Bhanu Prakash V L Telugu, Dana Levasseur, Kang Zhang, Han Liang, Jing Crystal Zhao, Tetsuya S Tanaka, Gary Stormo, Sheng Zhong

表观遗传

发表日期：2017

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Transcriptomic insights into the genetic basis of mammalian limb diversity

转录组学洞察哺乳动物肢体多样性的遗传基础

期刊:BMC Evolutionary Biology

影响因子:

doi:10.1186/s12862-017-0902-6

Jennifer A Maier, Marcelo Rivas-Astroza, Jenny Deng, Anna Dowling, Paige Oboikovitz, Xiaoyi Cao, Richard R Behringer, Chris J Cretekos, John J Rasweiler 4th, Sheng Zhong, Karen E Sears

发表日期：2017

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The Relationship between Gene Network Structure and Expression Variation among Individuals and Species

基因网络结构与个体和物种间表达变异的关系

期刊:PLoS Genetics

影响因子:3.7

doi:10.1371/journal.pgen.1005398

Sears, Karen E; Maier, Jennifer A; Rivas-Astroza, Marcelo; Poe, Rachel; Zhong, Sheng; Kosog, Kari; Marcot, Jonathan D; Behringer, Richard R; Cretekos, Chris J; Rasweiler, John J 4th; Rapti, Zoi

发表日期：2015

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Genomic analysis of hepatic farnesoid X receptor binding sites reveals altered binding in obesity and direct gene repression by farnesoid X receptor in mice

对小鼠肝脏法尼醇X受体结合位点的基因组分析揭示了肥胖状态下结合位点的改变以及法尼醇X受体对基因的直接抑制作用。

期刊:Hepatology

影响因子:15.8

doi:10.1002/hep.25609

Lee, Jiyoung; Seok, Sunmi; Yu, Pengfei; Kim, Kyungsu; Smith, Zachary; Rivas-Astroza, Marcelo; Zhong, Sheng; Kemper, Jongsook Kim

Mapping personal functional data to personal genomes

将个人功能数据映射到个人基因组

期刊:

影响因子:

doi:10.1093/bioinformatics/btr578

Rivas-Astroza, Marcelo; Xie, Dan; Cao, Xiaoyi; Zhong, Sheng

发表日期：2011

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Dynamic metabolic regulation of histone modifications during the yeast metabolic cycle

酵母代谢周期中组蛋白修饰的动态代谢调控

Phenotype-specific estimation of metabolic fluxes using gene expression data

利用基因表达数据进行表型特异性代谢通量估计

Metabolic flux configuration determination using information entropy

利用信息熵确定代谢通量构型

Rainbow-Seq: Combining Cell Lineage Tracing with Single-Cell RNA Sequencing in Preimplantation Embryos

Rainbow-Seq：将细胞谱系追踪与植入前胚胎单细胞RNA测序相结合

Systematic Mapping of RNA-Chromatin Interactions In Vivo

体内RNA-染色质相互作用的系统性定位

SMARCAD1 Contributes to the Regulation of Naive Pluripotency by Interacting with Histone Citrullination

SMARCAD1 通过与组蛋白瓜氨酸化相互作用来促进幼稚多能性的调节

Transcriptomic insights into the genetic basis of mammalian limb diversity

转录组学洞察哺乳动物肢体多样性的遗传基础

The Relationship between Gene Network Structure and Expression Variation among Individuals and Species

基因网络结构与个体和物种间表达变异的关系

Genomic analysis of hepatic farnesoid X receptor binding sites reveals altered binding in obesity and direct gene repression by farnesoid X receptor in mice

对小鼠肝脏法尼醇X受体结合位点的基因组分析揭示了肥胖状态下结合位点的改变以及法尼醇X受体对基因的直接抑制作用。

Mapping personal functional data to personal genomes

将个人功能数据映射到个人基因组