日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

An integrated view of the structure and function of the human 4D nucleome

人类4D核组结构和功能的综合视图

Dekker, Job; Oksuz, Betul Akgol; Zhang, Yang; Wang, Ye; Minsk, Miriam K; Kuang, Shuzhen; Yang, Liyan; Gibcus, Johan H; Krietenstein, Nils; Rando, Oliver J; Xu, Jie; Janssens, Derek H; Henikoff, Steven; Kukalev, Alexander; Andréa, Willemin; Winick-Ng, Warren; Kempfer, Rieke; Pombo, Ana; Yu, Miao; Kumar, Pradeep; Zhang, Liguo; Belmont, Andrew S; Sasaki, Takayo; van Schaik, Tom; Brueckner, Laura; Peric-Hupkes, Daan; van Steensel, Bas; Wang, Ping; Chai, Haoxi; Kim, Minji; Ruan, Yijun; Zhang, Ran; Quinodoz, Sofia A; Bhat, Prashant; Guttman, Mitchell; Zhao, Wenxin; Chien, Shu; Liu, Yuan; Venev, Sergey V; Plewczynski, Dariusz; Azcarate, Ibai Irastorza; Szabó, Dominik; Thieme, Christoph J; Szczepińska, Teresa; Chiliński, Mateusz; Sengupta, Kaustav; Conte, Mattia; Esposito, Andrea; Abraham, Alex; Zhang, Ruochi; Wang, Yuchuan; Wen, Xingzhao; Wu, Qiuyang; Yang, Yang; Liu, Jie; Boninsegna, Lorenzo; Yildirim, Asli; Zhan, Yuxiang; Chiariello, Andrea Maria; Bianco, Simona; Lee, Lindsay; Hu, Ming; Li, Yun; Barnett, R Jordan; Cook, Ashley L; Emerson, Daniel J; Marchal, Claire; Zhao, Peiyao; Park, Peter J; Alver, Burak H; Schroeder, Andrew J; Navelkar, Rahi; Bakker, Clara; Ronchetti, William; Ehmsen, Shannon; Veit, Alexander D; Gehlenborg, Nils; Wang, Ting; Li, Daofeng; Wang, Xiaotao; Nicodemi, Mario; Ren, Bing; Zhong, Sheng; Phillips-Cremins, Jennifer E; Gilbert, David M; Pollard, Katherine S; Alber, Frank; Ma, Jian; Noble, William S; Yue, Feng

Epigenetic memory of colitis promotes tumour growth.

结肠炎的表观遗传记忆促进肿瘤生长。

Nagaraja Surya, Ojeda-Miron Lety, Zhang Ruochi, Oreskovic Ena, Hock Conrad, Hu Yan, Zeve Daniel, Sharma Karina, Hyman Roni R, Zhang Qiming, Castillo Andrew, Breault David T, Yilmaz Ömer H, Buenrostro Jason D

AMPCliff: Quantitative definition and benchmarking of activity cliffs in antimicrobial peptides

AMPCliff:抗菌肽活性悬崖的定量定义和基准测试

Li, Kewei; Wu, Yuqian; Li, Yinheng; Guo, Yutong; Kong, Yanwen; Wang, Yan; Liang, Yiyang; Fan, Yusi; Huang, Lan; Zhang, Ruochi; Zhou, Fengfeng

Constrained Diffusion as a Paradigm for Evolution

受限扩散作为演化的范式

Lazarev, Daniel; Sappington, Anna; Chau, Grant; Zhang, Ruochi; Berger, Bonnie

Multiscale footprints reveal the organization of cis-regulatory elements

多尺度足迹揭示了顺式调控元件的组织结构

Yan Hu # ,Max A Horlbeck # ,Ruochi Zhang # ,Sai Ma ,Rojesh Shrestha ,Vinay K Kartha ,Fabiana M Duarte ,Conrad Hock ,Rachel E Savage ,Ajay Labade ,Heidi Kletzien ,Alia Meliki ,Andrew Castillo ,Neva C Durand ,Eugenio Mattei ,Lauren J Anderson ,Tristan Tay ,Andrew S Earl ,Noam Shoresh ,Charles B Epstein ,Amy J Wagers ,Jason D Buenrostro

Unified molecular approach for spatial epigenome, transcriptome, and cell lineages.

空间表观基因组、转录组和细胞谱系的统一分子方法

Huang Yung-Hsin, Belk Julia A, Zhang Ruochi, Weiser Natasha E, Chiang Zachary, Jones Matthew G, Mischel Paul S, Buenrostro Jason D, Chang Howard Y

PepLand: a large-scale pre-trained peptide representation model for a comprehensive landscape of both canonical and non-canonical amino acids

PepLand:一个大规模预训练肽段表征模型,用于全面展现典型和非典型氨基酸的组成。

Zhang, Ruochi; Wu, Haoran; Liu, Chang; Yang, Qian; Xiu, Yuting; Li, Kewei; Chen, Ningning; Wang, Yu; Wang, Yan; Gao, Xin; Zhou, Fengfeng

Multi-omics reveals EGCG's anti-calcification effects associated with gut microbiota and metabolite remodeling

多组学研究揭示EGCG的抗钙化作用与肠道菌群和代谢物重塑有关

Zhang, Yating; Tang, Zihan; Zhu, Junwen; Zhao, Ruochi; Wang, Shuangshuang

Engineered histones reshape chromatin in human cells.

工程化组蛋白重塑人类细胞中的染色质。

Jena Siddhartha G, Nagaraja Surya, Earl Andrew S, Driller-Colangelo Amalia R, Quezada Michael A, Oreskovic Ena, Horlbeck Max A, Zhang Ruochi, Gomarga Wilson, Buenrostro Jason D

scGHOST: identifying single-cell 3D genome subcompartments

scGHOST:识别单细胞 3D 基因组亚区室

Xiong, Kyle; Zhang, Ruochi; Ma, Jian