日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Evolution of oncogene amplification across 86,000 cancer cell genomes

86000个癌细胞基因组中癌基因扩增的演变

Lee, Jake June-Koo; Salehi, Sohrab; Myers, Matthew A; Williams, Marc J; Yao, Melissa A; Al-Rawi, Duaa H; Lee, Jin; Sun, Eric G; Thol, Kerstin; Choi, Seongmin; Havasov, Eliyahu; Steinberg, Asher Preska; Wu, Michelle; Rusk, Nicole; Timmons, Caitlin; Phua, Cheryl Zi Jin; Martis, Stephen; Mohibullah, Neeman; Manoj, Parvathy; Redin, Esther; Quintanal-Villalonga, Álvaro; Razavi, Pedram; Aparicio, Samuel; Rekhtman, Natasha; Tabar, Viviane; Awad, Mark M; Yu, Helena A; Yu, Kenny Kwok Hei; Ventura, Andrea; McPherson, Andrew; Rudin, Charles M; Shah, Sohrab P

Tracking clonal evolution during treatment in ovarian cancer using cell-free DNA

利用游离DNA追踪卵巢癌治疗过程中的克隆演变

Williams, Marc J; Vázquez-García, Ignacio; Tam, Grittney; Wu, Michelle; Varice, Nancy; Havasov, Eliyahu; Shi, Hongyu; Al-Rawi, Duaa H; Satas, Gryte; Lees, Hannah J; Lee, Jake June-Koo; Myers, Matthew A; Zatzman, Matthew; Rusk, Nicole; Ali, Emily; Shah, Ronak H; Berger, Michael F; Mohibullah, Neeman; Lakhman, Yulia; Chi, Dennis S; Abu-Rustum, Nadeem R; Aghajanian, Carol; McPherson, Andrew; Zamarin, Dmitriy; Loomis, Brian; Weigelt, Britta; Friedman, Claire F; Shah, Sohrab P

Ongoing genome doubling shapes evolvability and immunity in ovarian cancer.

持续的基因组倍增塑造了卵巢癌的进化能力和免疫力

McPherson Andrew, Vázquez-García Ignacio, Myers Matthew A, Al-Rawi Duaa H, Zatzman Matthew, Weiner Adam C, Freeman Samuel, Mohibullah Neeman, Satas Gryte, Williams Marc J, Ceglia Nicholas, Norkūnaitė Danguolė, Zhang Allen W, Li Jun, Lim Jamie L P, Wu Michelle, Choi Seongmin, Havasov Eliyahu, Grewal Diljot, Shi Hongyu, Kim Minsoo, Schwarz Roland F, Kaufmann Tom, Dinh Khanh Ngoc, Uhlitz Florian, Tran Julie, Wu Yushi, Patel Ruchi, Ramakrishnan Satish, Kim DooA, Clarke Justin, Green Hunter, Ali Emily, DiBona Melody, Varice Nancy, Kundra Ritika, Broach Vance, Gardner Ginger J, Roche Kara Long, Sonoda Yukio, Zivanovic Oliver, Kim Sarah H, Grisham Rachel N, Liu Ying L, Viale Agnes, Rusk Nicole, Lakhman Yulia, Ellenson Lora H, Tavaré Simon, Aparicio Samuel, Chi Dennis S, Aghajanian Carol, Abu-Rustum Nadeem R, Friedman Claire F, Zamarin Dmitriy, Weigelt Britta, Bakhoum Samuel F, Shah Sohrab P

Complementary modes of resistance to EGFR TKI in lung adenocarcinoma through MAPK activation and cellular plasticity

肺腺癌中通过 MAPK 激活和细胞可塑性产生的 EGFR TKI 互补耐药模式

Zatzman, Matthew; Quintanal-Villalonga, Alvaro; Salehi, Sohrab; Ceglia, Nicholas; Lee, Jake June-Koo; Pupo, Amanda N; Falcon, Christina J; Rusk, Nicole; Masilionis, Ignas; Chaudhary, Ojasvi; Manoj, Parvathy; Chaligne, Ronan; McPherson, Andrew; Rudin, Charles M; Shah, Sohrab P; Yu, Helena A

Disrupted priming within draining lymph nodes drives immune quiescence in gastric cancer.

引流淋巴结内免疫启动紊乱导致胃癌免疫静止

Salehi Sohrab, Stroobant Emily E, Lees Hannah, Lin Ya-Hui, Shimada Shoji, Abate Miseker, Zatzman Matthew J, Ceglia Nicholas, Freeman Samuel S, Laszkowska Monika, Maron Steven, McPherson Andrew, Rusk Nicole, Havasov Eliyahu, Drebin Harrison, Gu Ping, Tang Laura H, Janjigian Yelena Y, Soldatov Ruslan, Chaligne Ronan, Shah Sohrab P, Strong Vivian E, Vardhana Santosha A

Single-cell mtDNA dynamics in tumors is driven by coregulation of nuclear and mitochondrial genomes

肿瘤中单细胞线粒体DNA的动态变化是由核基因组和线粒体基因组的协同调控驱动的。

Kim, Minsoo; Gorelick, Alexander N; Vàzquez-García, Ignacio; Williams, Marc J; Salehi, Sohrab; Shi, Hongyu; Weiner, Adam C; Ceglia, Nick; Funnell, Tyler; Park, Tricia; Boscenco, Sonia; O'Flanagan, Ciara H; Jiang, Hui; Grewal, Diljot; Tang, Cerise; Rusk, Nicole; Gammage, Payam A; McPherson, Andrew; Aparicio, Sam; Shah, Sohrab P; Reznik, Ed

Inferring replication timing and proliferation dynamics from single-cell DNA sequencing data

从单细胞DNA测序数据推断复制时间和增殖动力学

Weiner, Adam C; Williams, Marc J; Shi, Hongyu; Vázquez-García, Ignacio; Salehi, Sohrab; Rusk, Nicole; Aparicio, Samuel; Shah, Sohrab P; McPherson, Andrew

Ongoing genome doubling promotes evolvability and immune dysregulation in ovarian cancer

持续的基因组加倍促进卵巢癌的进化能力和免疫失调

McPherson, Andrew; Vázquez-García, Ignacio; Myers, Matthew A; Zatzman, Matthew; Al-Rawi, Duaa; Weiner, Adam; Freeman, Samuel; Mohibullah, Neeman; Satas, Gryte; Williams, Marc J; Ceglia, Nicholas; Zhang, Allen W; Li, Jun; Lim, Jamie L P; Wu, Michelle; Choi, Seongmin; Havasov, Eliyahu; Grewal, Diljot; Shi, Hongyu; Kim, Minsoo; Schwarz, Roland; Kaufmann, Tom; Dinh, Khanh Ngoc; Uhlitz, Florian; Tran, Julie; Wu, Yushi; Patel, Ruchi; Ramakrishnan, Satish; Kim, DooA; Clarke, Justin; Green, Hunter; Ali, Emily; DiBona, Melody; Varice, Nancy; Kundra, Ritika; Broach, Vance; Gardner, Ginger J; Roche, Kara Long; Sonoda, Yukio; Zivanovic, Oliver; Kim, Sarah H; Grisham, Rachel N; Liu, Ying L; Viale, Agnes; Rusk, Nicole; Lakhman, Yulia; Ellenson, Lora H; Tavaré, Simon; Aparicio, Samuel; Chi, Dennis S; Aghajanian, Carol; Abu-Rustum, Nadeem R; Friedman, Claire F; Zamarin, Dmitriy; Weigelt, Britta; Bakhoum, Samuel F; Shah, Sohrab P

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

利用 cBioPortal 对 AACR 项目 GENIE 生物制药合作项目的纵向基因组和临床数据进行分析和可视化

de Bruijn, Ino; Kundra, Ritika; Mastrogiacomo, Brooke; Tran, Thinh Ngoc; Sikina, Luke; Mazor, Tali; Li, Xiang; Ochoa, Angelica; Zhao, Gaofei; Lai, Bryan; Abeshouse, Adam; Baiceanu, Diana; Ciftci, Ersin; Dogrusoz, Ugur; Dufilie, Andrew; Erkoc, Ziya; Garcia Lara, Elena; Fu, Zhaoyuan; Gross, Benjamin; Haynes, Charles; Heath, Allison; Higgins, David; Jagannathan, Prasanna; Kalletla, Karthik; Kumari, Priti; Lindsay, James; Lisman, Aaron; Leenknegt, Bas; Lukasse, Pieter; Madela, Divya; Madupuri, Ramyasree; van Nierop, Pim; Plantalech, Oleguer; Quach, Joyce; Resnick, Adam C; Rodenburg, Sander Y A; Satravada, Baby A; Schaeffer, Fedde; Sheridan, Robert; Singh, Jessica; Sirohi, Rajat; Sumer, Selcuk Onur; van Hagen, Sjoerd; Wang, Avery; Wilson, Manda; Zhang, Hongxin; Zhu, Kelsey; Rusk, Nicole; Brown, Samantha; Lavery, Jessica A; Panageas, Katherine S; Rudolph, Julia E; LeNoue-Newton, Michele L; Warner, Jeremy L; Guo, Xindi; Hunter-Zinck, Haley; Yu, Thomas V; Pilai, Shirin; Nichols, Chelsea; Gardos, Stuart M; Philip, John; Kehl, Kenneth L; Riely, Gregory J; Schrag, Deborah; Lee, Jocelyn; Fiandalo, Michael V; Sweeney, Shawn M; Pugh, Trevor J; Sander, Chris; Cerami, Ethan; Gao, Jianjiong; Schultz, Nikolaus

Identification of transcriptional programs using dense vector representations defined by mutual information with GeneVector

利用基于互信息定义的密集向量表示法和基因向量法识别转录程序

Ceglia, Nicholas; Sethna, Zachary; Freeman, Samuel S; Uhlitz, Florian; Bojilova, Viktoria; Rusk, Nicole; Burman, Bharat; Chow, Andrew; Salehi, Sohrab; Kabeer, Farhia; Aparicio, Samuel; Greenbaum, Benjamin D; Shah, Sohrab P; McPherson, Andrew