日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

iModulonDB 2.0: dynamic tools to facilitate knowledge-mining and user-enabled analyses of curated transcriptomic datasets

iModulonDB 2.0:用于促进知识挖掘和用户对精选转录组数据集进行分析的动态工具

Catoiu, Edward A; Krishnan, Jayanth; Li, Gaoyuan; Lou, Xuwen A; Rychel, Kevin; Yuan, Yuan; Bajpe, Heera; Patel, Arjun; Choe, Donghui; Shin, Jongoh; Burrows, Joshua; Phaneuf, Patrick V; Zielinski, Daniel C; Palsson, Bernhard O

Revealing systematic changes in the transcriptome during the transition from exponential growth to stationary phase

揭示从指数增长期到稳定期转变过程中转录组的系统性变化

Lim, Hyun Gyu; Gao, Ye; Rychel, Kevin; Lamoureux, Cameron; Lou, Xuwen A; Palsson, Bernhard O

Laboratory Evolution Reveals Transcriptional Mechanisms Underlying Thermal Adaptation of Escherichia coli

实验室进化揭示大肠杆菌热适应的转录机制

Rychel, Kevin; Chen, Ke; Catoiu, Edward A; Olson, Elina; Sandberg, Troy E; Gao, Ye; Xu, Sibei; Hefner, Ying; Szubin, Richard; Patel, Arjun; Feist, Adam M; Palsson, Bernhard O

Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant Acinetobacter baumannii

独立成分分析揭示了多重耐药鲍曼不动杆菌全局转录调控结构中49个独立调控的基因集。

Menon, Nitasha D; Poudel, Saugat; Sastry, Anand V; Rychel, Kevin; Szubin, Richard; Dillon, Nicholas; Tsunemoto, Hannah; Hirose, Yujiro; Nair, Bipin G; Kumar, Geetha B; Palsson, Bernhard O; Nizet, Victor

A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of Streptococcus pyogenes

全球传播的高侵袭性化脓性链球菌M1菌株的基因组规模代谢模型

Hirose, Yujiro; Zielinski, Daniel C; Poudel, Saugat; Rychel, Kevin; Baker, Jonathon L; Toya, Yoshihiro; Yamaguchi, Masaya; Heinken, Almut; Thiele, Ines; Kawabata, Shigetada; Palsson, Bernhard O; Nizet, Victor

Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in Pseudomonas putida KT2440

利用机器学习分析RB-TnSeq适应度数据预测恶臭假单胞菌KT2440中的功能基因模块

Borchert, Andrew J; Bleem, Alissa C; Lim, Hyun Gyu; Rychel, Kevin; Dooley, Keven D; Kellermyer, Zoe A; Hodges, Tracy L; Palsson, Bernhard O; Beckham, Gregg T

The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions

转录组中权衡压力和生长功能的权衡特征

Dalldorf, Christopher; Rychel, Kevin; Szubin, Richard; Hefner, Ying; Patel, Arjun; Zielinski, Daniel C; Palsson, Bernhard O

iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia

iModulonMiner 和 PyModulon:用于无监督基因表达谱挖掘的软件

Sastry, Anand V; Yuan, Yuan; Poudel, Saugat; Rychel, Kevin; Yoo, Reo; Lamoureux, Cameron R; Li, Gaoyuan; Burrows, Joshua T; Chauhan, Siddharth; Haiman, Zachary B; Al Bulushi, Tahani; Seif, Yara; Palsson, Bernhard O; Zielinski, Daniel C

High-resolution temporal profiling of E. coli transcriptional response

大肠杆菌转录反应的高分辨率时间分析

Miano, Arianna; Rychel, Kevin; Lezia, Andrew; Sastry, Anand; Palsson, Bernhard; Hasty, Jeff

Laboratory evolution, transcriptomics, and modeling reveal mechanisms of paraquat tolerance

实验室进化、转录组学和建模揭示了百草枯耐受机制

Rychel, Kevin; Tan, Justin; Patel, Arjun; Lamoureux, Cameron; Hefner, Ying; Szubin, Richard; Johnsen, Josefin; Mohamed, Elsayed Tharwat Tolba; Phaneuf, Patrick V; Anand, Amitesh; Olson, Connor A; Park, Joon Ho; Sastry, Anand V; Yang, Laurence; Feist, Adam M; Palsson, Bernhard O