日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Severus detects somatic structural variation and complex rearrangements in cancer genomes using long-read sequencing

Severus 利用长读长测序技术检测癌症基因组中的体细胞结构变异和复杂重排。

Keskus, Ayse G; Bryant, Asher; Ahmad, Tanveer; Yoo, Byunggil; Aganezov, Sergey; Goretsky, Anton; Donmez, Ataberk; Lansdon, Lisa A; Rodriguez, Isabel; Park, Jimin; Liu, Yuelin; Cui, Xiwen; Gardner, Joshua; McNulty, Brandy; Sacco, Samuel; Shetty, Jyoti; Zhao, Yongmei; Tran, Bao; Narzisi, Giuseppe; Helland, Adrienne; Cook, Daniel E; Chang, Pi-Chuan; Kolesnikov, Alexey; Carroll, Andrew; Molloy, Erin K; Bi, Chengpeng; Walter, Adam; Gibson, Margaret; Pushel, Irina; Guest, Erin; Pastinen, Tomi; Shafin, Kishwar; Miga, Karen H; Malikic, Salem; Day, Chi-Ping; Robine, Nicolas; Sahinalp, Cenk; Dean, Michael; Farooqi, Midhat S; Paten, Benedict; Kolmogorov, Mikhail

Stochastic modeling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones

单细胞基因表达适应的随机建模揭示了非基因组因素对肿瘤亚克隆进化的贡献

Hirsch, M G; Pal, Soumitra; Rashidi Mehrabadi, Farid; Malikic, Salem; Gruen, Charli; Sassano, Antonella; Pérez-Guijarro, Eva; Merlino, Glenn; Sahinalp, S Cenk; Molloy, Erin K; Day, Chi-Ping; Przytycka, Teresa M

Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-Microbes

使用 CSI-Microbes 从多个单细胞 RNA 测序平台中鉴定细胞内细菌

Welles Robinson, Joshua K Stone, Fiorella Schischlik, Billel Gasmi, Michael C Kelly, Charlie Seibert, Kimia Dadkhah, E Michael Gertz, Joo Sang Lee, Kaiyuan Zhu, Lichun Ma, Xin Wei Wang, S Cenk Sahinalp, Rob Patro, Mark D M Leiserson, Curtis C Harris, Alejandro A Schäffer, Eytan Ruppin

Geny: a genotyping tool for allelic decomposition of killer cell immunoglobulin-like receptor genes

Geny:一种用于杀伤细胞免疫球蛋白样受体基因等位基因分解的基因分型工具

Zhou, Qinghui; Ghezelji, Mazyar; Hari, Ananth; Ford, Michael K B; Holley, Connor; Sahinalp, S Cenk; Numanagić, Ibrahim

Stochastic modelling of single-cell gene expression adaptation reveals non-genomic contribution to evolution of tumor subclones

单细胞基因表达适应的随机建模揭示了非基因组因素对肿瘤亚克隆进化的贡献

Hirsch, M G; Pal, Soumitra; Mehrabadi, Farid Rashidi; Malikic, Salem; Gruen, Charli; Sassano, Antonella; Pérez-Guijarro, Eva; Merlino, Glenn; Sahinalp, Cenk; Molloy, Erin K; Day, Chi-Ping; Przytycka, Teresa M

Severus: accurate detection and characterization of somatic structural variation in tumor genomes using long reads.

Severus:利用长读长技术准确检测和表征肿瘤基因组中的体细胞结构变异。

Keskus Ayse, Bryant Asher, Ahmad Tanveer, Yoo Byunggil, Aganezov Sergey, Goretsky Anton, Donmez Ataberk, Lansdon Lisa A, Rodriguez Isabel, Park Jimin, Liu Yuelin, Cui Xiwen, Gardner Joshua, McNulty Brandy, Sacco Samuel, Shetty Jyoti, Zhao Yongmei, Tran Bao, Narzisi Giuseppe, Helland Adrienne, Cook Daniel E, Chang Pi-Chuan, Kolesnikov Alexey, Carroll Andrew, Molloy Erin K, Pushel Irina, Guest Erin, Pastinen Tomi, Shafin Kishwar, Miga Karen H, Malikic Salem, Day Chi-Ping, Robine Nicolas, Sahinalp Cenk, Dean Michael, Farooqi Midhat S, Paten Benedict, Kolmogorov Mikhail

Big data in basic and translational cancer research

大数据在基础和转化癌症研究中的应用

Jiang, Peng; Sinha, Sanju; Aldape, Kenneth; Hannenhalli, Sridhar; Sahinalp, Cenk; Ruppin, Eytan

Analytical Validation of a Computational Method for Pharmacogenetic Genotyping from Clinical Whole Exome Sequencing

基于临床全外显子组测序的药物遗传学基因分型计算方法的分析验证

Ly, Reynold C; Shugg, Tyler; Ratcliff, Ryan; Osei, Wilberforce; Lynnes, Ty C; Pratt, Victoria M; Schneider, Bryan P; Radovich, Milan; Bray, Steven M; Salisbury, Benjamin A; Parikh, Baiju; Sahinalp, S Cenk; Numanagić, Ibrahim; Skaar, Todd C

Proteogenomic Analysis Unveils the HLA Class I-Presented Immunopeptidome in Melanoma and EGFR-Mutant Lung Adenocarcinoma

蛋白质基因组学分析揭示黑色素瘤和EGFR突变型肺腺癌中HLA I类分子呈递的免疫肽组

Yue A Qi ,Tapan K Maity ,Constance M Cultraro ,Vikram Misra ,Xu Zhang ,Catherine Ade ,Shaojian Gao ,David Milewski ,Khoa D Nguyen ,Mohammad H Ebrahimabadi ,Ken-Ichi Hanada ,Javed Khan ,Cenk Sahinalp ,James C Yang ,Udayan Guha

Studying the History of Tumor Evolution from Single-Cell Sequencing Data by Exploring the Space of Binary Matrices

通过探索二元矩阵空间,从单细胞测序数据中研究肿瘤演化史

Malikić, Salem; Mehrabadi, Farid Rashidi; Azer, Erfan Sadeqi; Ebrahimabadi, Mohammad Haghir; Sahinalp, Suleyman Cenk