日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Towards accurate indel calling for oncopanel sequencing through an international pipeline competition at precisionFDA

通过 precisionFDA 的国际管道竞赛,实现肿瘤面板测序的准确插入/缺失调用

Binsheng Gong, Samir Lababidi, Rebecca Kusko, Khaled Bouri, Sarah Prezek, Vishal Thovarai, Anish Prasanna, Ezekiel J Maier, Mahdi Golkaram, Xingqiang Sun, Konstantinos Kyriakidis, João Paulo Kitajima, Sayed Mohammad Ebrahim Sahraeian, Yunfei Guo, Elaine Johanson, Wendell Jones, Weida Tong, Joshua Xu

Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project

利用测序质量控制 2 (SEQC2) 项目中的单个细胞系测序数据,通过人工审核扩展基准插入缺失 (indel) 数据集。

Binsheng Gong ,Dan Li ,Yifan Zhang ,Rebecca Kusko ,Samir Lababidi ,Zehui Cao ,Mingyang Chen ,Ning Chen ,Qiaochu Chen ,Qingwang Chen ,Jiacheng Dai ,Qiang Gan ,Yuechen Gao ,Mingkun Guo ,Gunjan Hariani ,Yujie He ,Wanwan Hou ,He Jiang ,Garima Kushwaha ,Jian-Liang Li ,Jianying Li ,Yulan Li ,Liang-Chun Liu ,Ruimei Liu ,Shiming Liu ,Edwin Meriaux ,Mengqing Mo ,Mathew Moore ,Tyler J Moss ,Quanne Niu ,Ananddeep Patel ,Luyao Ren ,Nedda F Saremi ,Erfei Shang ,Jun Shang ,Ping Song ,Siqi Sun ,Brent J Urban ,Danke Wang ,Shangzi Wang ,Zhining Wen ,Xiangyi Xiong ,Jingcheng Yang ,Lihui Yin ,Chao Zhang ,Ruolan Zhang ,Ambica Bhandari ,Wanshi Cai ,Agda Karina Eterovic ,Dalila B Megherbi ,Tieliu Shi ,Chen Suo ,Ying Yu ,Yuanting Zheng ,Natalia Novoradovskaya ,Renee L Sears ,Leming Shi ,Wendell Jones ,Weida Tong ,Joshua Xu

Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing

利用全基因组和全外显子组测序进行癌症突变检测的最佳实践

Wenming Xiao # ,Luyao Ren # ,Zhong Chen ,Li Tai Fang ,Yongmei Zhao ,Justin Lack ,Meijian Guan ,Bin Zhu ,Erich Jaeger ,Liz Kerrigan ,Thomas M Blomquist ,Tiffany Hung ,Marc Sultan ,Kenneth Idler ,Charles Lu ,Andreas Scherer ,Rebecca Kusko ,Malcolm Moos ,Chunlin Xiao ,Stephen T Sherry ,Ogan D Abaan ,Wanqiu Chen ,Xin Chen ,Jessica Nordlund ,Ulrika Liljedahl ,Roberta Maestro ,Maurizio Polano ,Jiri Drabek ,Petr Vojta ,Sulev Kõks ,Ene Reimann ,Bindu Swapna Madala ,Timothy Mercer ,Chris Miller ,Howard Jacob ,Tiffany Truong ,Ali Moshrefi ,Aparna Natarajan ,Ana Granat ,Gary P Schroth ,Rasika Kalamegham ,Eric Peters ,Virginie Petitjean ,Ashley Walton ,Tsai-Wei Shen ,Keyur Talsania ,Cristobal Juan Vera ,Kurt Langenbach ,Maryellen de Mars ,Jennifer A Hipp ,James C Willey ,Jing Wang ,Jyoti Shetty ,Yuliya Kriga ,Arati Raziuddin ,Bao Tran ,Yuanting Zheng ,Ying Yu ,Margaret Cam ,Parthav Jailwala ,Cu Nguyen ,Daoud Meerzaman ,Qingrong Chen ,Chunhua Yan ,Ben Ernest ,Urvashi Mehra ,Roderick V Jensen ,Wendell Jones ,Jian-Liang Li ,Brian N Papas ,Mehdi Pirooznia ,Yun-Ching Chen ,Fayaz Seifuddin ,Zhipan Li ,Xuelu Liu ,Wolfgang Resch ,Jingya Wang ,Leihong Wu ,Gokhan Yavas ,Corey Miles ,Baitang Ning ,Weida Tong ,Christopher E Mason ,Eric Donaldson ,Samir Lababidi ,Louis M Staudt ,Zivana Tezak ,Huixiao Hong ,Charles Wang ,Leming Shi

Interleukin-4 receptor alpha overexpression in human bladder cancer correlates with the pathological grade and stage of the disease

人类膀胱癌中白细胞介素-4 受体 α 的过度表达与疾病的病理等级和分期相关

Bharat H Joshi, Pamela Leland, Samir Lababidi, Frederick Varrichio, Raj K Puri

Chromosomal instability is associated with higher expression of genes implicated in epithelial-mesenchymal transition, cancer invasiveness, and metastasis and with lower expression of genes involved in cell cycle checkpoints, DNA repair, and chromatin maintenance

染色体不稳定性与上皮-间质转化、癌症侵袭性和转移性基因表达增高有关,与细胞周期检查点、DNA 修复和染色质维护相关基因表达降低有关

Anna V Roschke, Oleg K Glebov, Samir Lababidi, Kristen S Gehlhaus, John N Weinstein, Ilan R Kirsch

Integrating data on DNA copy number with gene expression levels and drug sensitivities in the NCI-60 cell line panel

将 NCI-60 细胞系组中的 DNA 拷贝数数据与基因表达水平和药物敏感性进行整合

Kimberly J Bussey, Koei Chin, Samir Lababidi, Mark Reimers, William C Reinhold, Wen-Lin Kuo, Fuad Gwadry, Ajay, Hosein Kouros-Mehr, Jane Fridlyand, Ajay Jain, Colin Collins, Satoshi Nishizuka, Giovanni Tonon, Anna Roschke, Kristen Gehlhaus, Ilan Kirsch, Dominic A Scudiero, Joe W Gray, John N Weinste