日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Bidirectional CRISPR screens decode a GLIS3-dependent fibrotic cell circuit.

双向 CRISPR 筛选解码 GLIS3 依赖性纤维化细胞回路。

Pokatayev Vladislav, Jaiswal Alok, Shih Angela R, Segerstolpe à sa, Li Bihua, Creasey Elizabeth A, Zhao Yanhua, Lin Crystal, Murphy Shane, Chou Chih-Hung, Graham Daniel B, Xavier Ramnik J

Spatial transcriptomics reveals altered communities and drivers of aberrant epithelia and pro-fibrotic fibroblasts in interstitial lung diseases.

空间转录组学揭示了间质性肺疾病中异常上皮细胞和促纤维化成纤维细胞的改变群落和驱动因素。

Jaiswal Alok, Kooistra Tristan, Pokatayev Vladislav, Bastos Hélder N, Santos Rita F, Sarraf Tresa R, Segerstolpe à sa, Lin Crystal, Amir-Zilberstein Liat, Twardus Shaina, Shannon Kevin, Murphy Shane P, Knipe Rachel, Ganzleben Ingo K, Black Katharine E, Delorey Toni M, Graham Daniel B, Hung Yin P, Hariri Lida P, Deguine Jacques, Carvalho Agostinho, Medoff Benjamin D, Xavier Ramnik J

Author Correction: A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features

作者更正:转移性乳腺癌活检样本的跨临床病理特征的多模态单细胞和空间表达图谱

Klughammer, Johanna; Abravanel, Daniel L; Segerstolpe, Åsa; Blosser, Timothy R; Goltsev, Yury; Cui, Yi; Goodwin, Daniel R; Sinha, Anubhav; Ashenberg, Orr; Slyper, Michal; Vigneau, Sébastien; Jané-Valbuena, Judit; Alon, Shahar; Caraccio, Chiara; Chen, Judy; Cohen, Ofir; Cullen, Nicole; DelloStritto, Laura K; Dionne, Danielle; Files, Janet; Frangieh, Allison; Helvie, Karla; Hughes, Melissa E; Inga, Stephanie; Kanodia, Abhay; Lako, Ana; MacKichan, Colin; Mages, Simon; Moriel, Noa; Murray, Evan; Napolitano, Sara; Nguyen, Kyleen; Nitzan, Mor; Ortiz, Rebecca; Patel, Miraj; Pfaff, Kathleen L; Porter, Caroline B M; Rotem, Asaf; Strauss, Sarah; Strasser, Robert; Thorner, Aaron R; Turner, Madison; Wakiro, Isaac; Waldman, Julia; Wu, Jingyi; Gómez Tejeda Zañudo, Jorge; Zhang, Diane; Lin, Nancy U; Tolaney, Sara M; Winer, Eric P; Boyden, Edward S; Chen, Fei; Nolan, Garry P; Rodig, Scott J; Zhuang, Xiaowei; Rozenblatt-Rosen, Orit; Johnson, Bruce E; Regev, Aviv; Wagle, Nikhil

Single-cell and spatial transcriptomics of stricturing Crohn's disease highlights a fibrosis-associated network

克罗恩病狭窄型的单细胞和空间转录组学研究揭示了一个与纤维化相关的网络

Kong, Lingjia; Subramanian, Sathish; Segerstolpe, Åsa; Tran, Vy; Shih, Angela R; Carter, Grace T; Kunitake, Hiroko; Twardus, Shaina W; Li, Jasmine; Gandhi, Shivam; Kaper, Marco E; Cauley, Christy; Chen, Eric J; Porter, Caroline B M; Delorey, Toni M; Bordeianou, Liliana; Ricciardi, Rocco; Ananthakrishnan, Ashwin N; Lau, Helena; Graham, Daniel B; Hodin, Richard; Deguine, Jacques; Smillie, Christopher S; Xavier, Ramnik J

A cellular and spatial atlas of TP53-associated tissue remodeling defines a multicellular tumor ecosystem in lung adenocarcinoma.

TP53 相关组织重塑的细胞和空间图谱定义了肺腺癌中的多细胞肿瘤生态系统。

Zhao William, Nguyen Thinh T, Bhagwat Atharva, Kumar Akhil, Giotti Bruno, Kepecs Benjamin, Weirather Jason L, Mahadevan Navin R, Segerstolpe Asa, Dolasia Komal, Abdul-Ghafar Jamshid, Besson Naomi R, Jones Stephanie M, Soong Brian Y, Li Chendi, Vigneau Sebastien, Slyper Michal, Wakiro Isaac, Su Mei-Ju, Helvie Karla, Frangieh Allison, Jane-Valbuena Judit, Ashenberg Orr, Awad Mark, Rotem Asaf, Bueno Raphael, Rozenblatt-Rosen Orit, Pfaff Kathleen, Rodig Scott, Hata Aaron N, Regev Aviv, Johnson Bruce E, Tsankov Alexander M

Spatial transcriptomics of healthy and fibrotic human liver at single-cell resolution

单细胞分辨率的健康和纤维化人类肝脏的空间转录组学

Brianna R Watson #, Biplab Paul #, Raza Ur Rahman, Liat Amir-Zilberstein, Åsa Segerstolpe, Eliana T Epstein, Shane Murphy, Ludwig Geistlinger, Tyrone Lee, Angela Shih, Jacques Deguine, Ramnik J Xavier, Jeffrey R Moffitt, Alan C Mullen1

SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics data.

SlideCNA:基于Slide-seq样空间转录组学数据的空间拷贝数变异检测。

Zhang Diane, Segerstolpe à sa, Slyper Michal, Waldman Julia, Murray Evan, Strasser Robert, Watter Jan, Cohen Ofir, Ashenberg Orr, Abravanel Daniel, Jané-Valbuena Judit, Mages Simon, Lako Ana, Helvie Karla, Rozenblatt-Rosen Orit, Rodig Scott, Chen Fei, Wagle Nikhil, Regev Aviv, Klughammer Johanna

Spatially restricted immune and microbiota-driven adaptation of the gut

肠道的空间限制性免疫和微生物群驱动的适应

Mayassi, Toufic; Li, Chenhao; Segerstolpe, Åsa; Brown, Eric M; Weisberg, Rebecca; Nakata, Toru; Yano, Hiroshi; Herbst, Paula; Artis, David; Graham, Daniel B; Xavier, Ramnik J

Transcriptomic and spatial dissection of human ex vivo right atrial tissue reveals proinflammatory microvascular changes in ischemic heart disease

对离体人右心房组织进行转录组学和空间分析,揭示缺血性心脏病中促炎性微血管变化

Suvi Linna-Kuosmanen,Eloi Schmauch,Kyriakitsa Galani,Johannes Ojanen,Carles A Boix,Tiit Örd,Anu Toropainen,Prosanta K Singha,Pierre R Moreau,Kristiina Harju,Adriana Blazeski,Åsa Segerstolpe,Veikko Lahtinen,Lei Hou,Kai Kang,Elamaran Meibalan,Leandro Z Agudelo,Hannu Kokki,Jari Halonen,Juho Jalkanen,Jarmo Gunn,Calum A MacRae,Maija Hollmén,Juha E K Hartikainen,Minna U Kaikkonen,Guillermo García-Cardeña,Pasi Tavi,Tuomas Kiviniemi,Manolis Kellis

Translational genetics identifies a phosphorylation switch in CARD9 required for innate inflammatory responses

转化遗传学发现CARD9中存在一个磷酸化开关,该开关是先天性炎症反应所必需的。

Marta Brandt ,Zhifang Cao ,Chirag Krishna ,Jennifer L Reedy ,Xiebin Gu ,Richard A Dutko ,Blayne A Oliver ,Betsabeh Khoramian Tusi ,Jihye Park ,Lauren Richey ,Åsa Segerstolpe ,Scott Litwiler ,Elizabeth A Creasey ,Kimberly L Carey ,Jatin M Vyas ,Daniel B Graham ,Ramnik J Xavier