日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Natural language-based representation and modeling of RBP binding

基于自然语言的RBP结合表示和建模

Elhajjajy, Shaimae; Weng, Zhiping

A linguistics-based algorithm for RBP motif and context discovery

一种基于语言学的RBP基序和上下文发现算法

Elhajjajy, Shaimae I; Weng, Zhiping

Evaluation of novel computational methods to identify RNA-binding protein footprints from structural data

评估用于从结构数据中识别RNA结合蛋白足迹的新型计算方法

Mizrahi, Orel; Corley, Meredith; Feldman, Ori; Fröhlking, Thorben; Sun, Lei; Ziesel, Alison; Antczak, Maciej; Bernetti, Mattia; Elhajjajy, Shaimae I; Huang, Wenze; Nguyen, Grady G; Park, Samuel S; Perez Martell, Raul I; Trinity, Luke; Xu, Kui; Zok, Tomasz; Bussi, Giovanni; Jabbari, Hosna; Orenstein, Yaron; Aviran, Sharon; Meyer, Michelle M; Yeo, Gene W

SPARK: in silico simulations for benchmarking nascent RNA sequencing experiments

SPARK:用于评估新兴RNA测序实验的计算机模拟

Calvo-Roitberg, Ezequiel; Lehman, Jesse W; Tam, Edric; Elhajjajy, Shaimae; Engelhardt, Barbara E; Pai, Athma A

A novel NLP-based method and algorithm to discover RNA-binding protein (RBP) motifs, contexts, binding preferences, and interactions

一种基于自然语言处理(NLP)的新型方法和算法,用于发现RNA结合蛋白(RBP)的基序、上下文、结合偏好和相互作用。

Elhajjajy, Shaimae I; Weng, Zhiping

An Expanded Registry of Candidate cis-Regulatory Elements for Studying Transcriptional Regulation

用于研究转录调控的候选顺式调控元件扩展注册库

Moore, Jill E; Pratt, Henry E; Fan, Kaili; Phalke, Nishigandha; Fisher, Jonathan; Elhajjajy, Shaimae I; Andrews, Gregory; Gao, Mingshi; Shedd, Nicole; Fu, Yu; Lacadie, Matthew C; Meza, Jair; Ganna, Mohit; Choudhury, Eva; Swofford, Ross; Farrell, Nina P; Pampari, Anusri; Ramalingam, Vivekanandan; Reese, Fairlie; Borsari, Beatrice; Yu, Michelle; Wattenberg, Eve; Ruiz-Romero, Marina; Razavi-Mohseni, Milad; Xu, Jinrui; Galeev, Timur; Beer, Michael A; Guigó, Roderic; Gerstein, Mark; Engreitz, Jesse; Ljungman, Mats; Reddy, Timothy E; Snyder, Michael P; Epstein, Charles B; Gaskell, Elizabeth; Bernstein, Bradley E; Dickel, Diane E; Visel, Axel; Pennacchio, Len A; Mortazavi, Ali; Kundaje, Anshul; Weng, Zhiping

Beyond genome-wide association studies: Investigating the role of noncoding regulatory elements in primary sclerosing cholangitis

超越全基因组关联研究:探究非编码调控元件在原发性硬化性胆管炎中的作用

Pratt, Henry E; Wu, Tong; Elhajjajy, Shaimae; Zhou, Jeffrey; Fitzgerald, Kate; Fazzio, Tom; Weng, Zhiping; Pratt, Daniel S

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity

ENCODE4长读长RNA测序数据集揭示了转录本结构多样性的不同类别

Reese, Fairlie; Williams, Brian; Balderrama-Gutierrez, Gabriela; Wyman, Dana; Çelik, Muhammed Hasan; Rebboah, Elisabeth; Rezaie, Narges; Trout, Diane; Razavi-Mohseni, Milad; Jiang, Yunzhe; Borsari, Beatrice; Morabito, Samuel; Liang, Heidi Yahan; McGill, Cassandra J; Rahmanian, Sorena; Sakr, Jasmine; Jiang, Shan; Zeng, Weihua; Carvalho, Klebea; Weimer, Annika K; Dionne, Louise A; McShane, Ariel; Bedi, Karan; Elhajjajy, Shaimae I; Upchurch, Sean; Jou, Jennifer; Youngworth, Ingrid; Gabdank, Idan; Sud, Paul; Jolanki, Otto; Strattan, J Seth; Kagda, Meenakshi S; Snyder, Michael P; Hitz, Ben C; Moore, Jill E; Weng, Zhiping; Bennett, David; Reinholdt, Laura; Ljungman, Mats; Beer, Michael A; Gerstein, Mark B; Pachter, Lior; Guigó, Roderic; Wold, Barbara J; Mortazavi, Ali

Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

作者更正:人类和小鼠基因组中DNA元件的扩展百科全书

Moore, Jill E; Purcaro, Michael J; Pratt, Henry E; Epstein, Charles B; Shoresh, Noam; Adrian, Jessika; Kawli, Trupti; Davis, Carrie A; Dobin, Alexander; Kaul, Rajinder; Halow, Jessica; Van Nostrand, Eric L; Freese, Peter; Gorkin, David U; Shen, Yin; He, Yupeng; Mackiewicz, Mark; Pauli-Behn, Florencia; Williams, Brian A; Mortazavi, Ali; Keller, Cheryl A; Zhang, Xiao-Ou; Elhajjajy, Shaimae I; Huey, Jack; Dickel, Diane E; Snetkova, Valentina; Wei, Xintao; Wang, Xiaofeng; Rivera-Mulia, Juan Carlos; Rozowsky, Joel; Zhang, Jing; Chhetri, Surya B; Zhang, Jialing; Victorsen, Alec; White, Kevin P; Visel, Axel; Yeo, Gene W; Burge, Christopher B; Lécuyer, Eric; Gilbert, David M; Dekker, Job; Rinn, John; Mendenhall, Eric M; Ecker, Joseph R; Kellis, Manolis; Klein, Robert J; Noble, William S; Kundaje, Anshul; Guigó, Roderic; Farnham, Peggy J; Cherry, J Michael; Myers, Richard M; Ren, Bing; Graveley, Brenton R; Gerstein, Mark B; Pennacchio, Len A; Snyder, Michael P; Bernstein, Bradley E; Wold, Barbara; Hardison, Ross C; Gingeras, Thomas R; Stamatoyannopoulos, John A; Weng, Zhiping

Integration of high-resolution promoter profiling assays reveals novel, cell type-specific transcription start sites across 115 human cell and tissue types

高分辨率启动子谱分析的整合揭示了115种人类细胞和组织类型中新的、细胞类型特异性的转录起始位点

Moore, Jill E; Zhang, Xiao-Ou; Elhajjajy, Shaimae I; Fan, Kaili; Pratt, Henry E; Reese, Fairlie; Mortazavi, Ali; Weng, Zhiping