日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Efficient and scalable electrostatics via spherical grids and treecode summation

通过球形网格和树形码求和实现高效且可扩展的静电学

Simmonett, Andrew C; Brooks, Bernard R; Darden, Thomas A

Seamless integration of GEM, a density based-force field, for QM/MM simulations via LICHEM, Psi4, and Tinker-HP

通过LICHEM、Psi4和Tinker-HP,将基于密度的力场GEM无缝集成到QM/MM模拟中。

Nochebuena, Jorge; Simmonett, Andrew C; Cisneros, G Andrés

OpenMM 8: Molecular Dynamics Simulation with Machine Learning Potentials

OpenMM 8:基于机器学习势的分子动力学模拟

Eastman, Peter; Galvelis, Raimondas; Peláez, Raúl P; Abreu, Charlles R A; Farr, Stephen E; Gallicchio, Emilio; Gorenko, Anton; Henry, Michael M; Hu, Frank; Huang, Jing; Krämer, Andreas; Michel, Julien; Mitchell, Joshua A; Pande, Vijay S; Rodrigues, João Pglm; Rodriguez-Guerra, Jaime; Simmonett, Andrew C; Singh, Sukrit; Swails, Jason; Turner, Philip; Wang, Yuanqing; Zhang, Ivy; Chodera, John D; De Fabritiis, Gianni; Markland, Thomas E

CHARMM at 45: Enhancements in Accessibility, Functionality, and Speed

CHARMM 45周年:可访问性、功能性和速度方面的提升

Hwang, Wonmuk; Austin, Steven L; Blondel, Arnaud; Boittier, Eric D; Boresch, Stefan; Buck, Matthias; Buckner, Joshua; Caflisch, Amedeo; Chang, Hao-Ting; Cheng, Xi; Choi, Yeol Kyo; Chu, Jhih-Wei; Crowley, Michael F; Cui, Qiang; Damjanovic, Ana; Deng, Yuqing; Devereux, Mike; Ding, Xinqiang; Feig, Michael F; Gao, Jiali; Glowacki, David R; Gonzales, James E 2nd; Hamaneh, Mehdi Bagerhi; Harder, Edward D; Hayes, Ryan L; Huang, Jing; Huang, Yandong; Hudson, Phillip S; Im, Wonpil; Islam, Shahidul M; Jiang, Wei; Jones, Michael R; Käser, Silvan; Kearns, Fiona L; Kern, Nathan R; Klauda, Jeffery B; Lazaridis, Themis; Lee, Jinhyuk; Lemkul, Justin A; Liu, Xiaorong; Luo, Yun; MacKerell, Alexander D Jr; Major, Dan T; Meuwly, Markus; Nam, Kwangho; Nilsson, Lennart; Ovchinnikov, Victor; Paci, Emanuele; Park, Soohyung; Pastor, Richard W; Pittman, Amanda R; Post, Carol Beth; Prasad, Samarjeet; Pu, Jingzhi; Qi, Yifei; Rathinavelan, Thenmalarchelvi; Roe, Daniel R; Roux, Benoit; Rowley, Christopher N; Shen, Jana; Simmonett, Andrew C; Sodt, Alexander J; Töpfer, Kai; Upadhyay, Meenu; van der Vaart, Arjan; Vazquez-Salazar, Luis Itza; Venable, Richard M; Warrensford, Luke C; Woodcock, H Lee; Wu, Yujin; Brooks, Charles L 3rd; Brooks, Bernard R; Karplus, Martin

MBX: A many-body energy and force calculator for data-driven many-body simulations

MBX:用于数据驱动型多体模拟的多体能量和力计算器

Riera, Marc; Knight, Christopher; Bull-Vulpe, Ethan F; Zhu, Xuanyu; Agnew, Henry; Smith, Daniel G A; Simmonett, Andrew C; Paesani, Francesco

Semi-automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion

CHARMM36脂质力场的半自动优化,以包含长程色散的显式处理

Yu, Yalun; Krämer, Andreas; Venable, Richard M; Simmonett, Andrew C; MacKerell, Alexander D Jr; Klauda, Jeffery B; Pastor, Richard W; Brooks, Bernard R

Thermodynamic Decomposition of Solvation Free Energies with Particle Mesh Ewald and Long-Range Lennard-Jones Interactions in Grid Inhomogeneous Solvation Theory

基于粒子网格Ewald和长程Lennard-Jones相互作用的网格非均匀溶剂化理论中的溶剂化自由能热力学分解

Chen, Lieyang; Cruz, Anthony; Roe, Daniel R; Simmonett, Andrew C; Wickstrom, Lauren; Deng, Nanjie; Kurtzman, Tom

A compression strategy for particle mesh Ewald theory

粒子网格Ewald理论的压缩策略

Simmonett, Andrew C; Brooks, Bernard R

Analytical Hessians for Ewald and particle mesh Ewald electrostatics

Ewald 和粒子网格 Ewald 静电学的解析 Hessian 矩阵

Simmonett, Andrew C; Brooks, Bernard R

A simplified charge projection scheme for long-range electrostatics in ab initio QM/MM calculations

一种用于从头算QM/MM计算中长程静电作用的简化电荷投影方案

Pan, Xiaoliang; Nam, Kwangho; Epifanovsky, Evgeny; Simmonett, Andrew C; Rosta, Edina; Shao, Yihan