日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Extraction of biological terms using large language models enhances the usability of metadata in the BioSample database

利用大型语言模型提取生物学术语可以提高 BioSample 数据库中元数据的可用性。

Ikeda, Shuya; Zou, Zhaonan; Bono, Hidemasa; Moriya, Yuki; Kawashima, Shuichi; Katayama, Toshiaki; Oki, Shinya; Ohta, Tazro

Chromosome-scale genomes of two wild flowering cherries (Cerasus itosakura and Cerasus jamasakura) provide insights into structural evolution in Cerasus

两种野生开花樱桃(Cerasus itosakura 和 Cerasus jamasakura)的染色体规模基因组提供了对樱桃结构进化的见解

Fujiwara, Kazumichi; Toyoda, Atsushi; Katsuki, Toshio; Sato, Yutaka; Biswa, Bhim B; Kishida, Takushi; Tsuruta, Momi; Nakamura, Yasukazu; Mochizuki, Takako; Kimura, Noriko; Kawamoto, Shoko; Ohta, Tazro; Nonomura, Ken-Ichi; Niki, Hironori; Yano, Hiroyuki; Umehara, Kinji; Suzuki, Chikahiko; Koide, Tsuyoshi

Expanding the concept of ID conversion in TogoID by introducing multi-semantic and label features

通过引入多语义和标签特征,扩展了TogoID中的ID转换概念。

Ikeda, Shuya; Aoki-Kinoshita, Kiyoko F; Chiba, Hirokazu; Goto, Susumu; Hosoda, Masae; Kawashima, Shuichi; Kim, Jin-Dong; Moriya, Yuki; Ohta, Tazro; Ono, Hiromasa; Takatsuki, Terue; Yamamoto, Yasunori; Katayama, Toshiaki

ChIP-Atlas 3.0: a data-mining suite to explore chromosome architecture together with large-scale regulome data

ChIP-Atlas 3.0:一套用于探索染色体结构和大规模调控组数据的数据挖掘工具

Zou, Zhaonan; Ohta, Tazro; Oki, Shinya

Recording provenance of workflow runs with RO-Crate

使用 RO-Crate 记录工作流程运行的来源

Leo, Simone; Crusoe, Michael R; Rodríguez-Navas, Laura; Sirvent, Raül; Kanitz, Alexander; De Geest, Paul; Wittner, Rudolf; Pireddu, Luca; Garijo, Daniel; Fernández, José M; Colonnelli, Iacopo; Gallo, Matej; Ohta, Tazro; Suetake, Hirotaka; Capella-Gutierrez, Salvador; de Wit, Renske; Kinoshita, Bruno P; Soiland-Reyes, Stian

Differences in the human gut microbiota with varying depressive symptom severity scores

人类肠道菌群与不同抑郁症状严重程度评分之间的差异

Masamura, Yuka; Kubo, Ryuichi; Midorikawa, Yuki; Shinozaki, Natsuko O; Watanabe, Satoshi; Maekawa, Sayumi; Takeda, Aya K; Ohta, Tazro

ChIP-Atlas 2021 update: a data-mining suite for exploring epigenomic landscapes by fully integrating ChIP-seq, ATAC-seq and Bisulfite-seq data

ChIP-Atlas 2021 更新:一个数据挖掘套件,通过全面整合 ChIP-seq、ATAC-seq 和亚硫酸氢盐测序数据,探索表观基因组图谱。

Zou, Zhaonan; Ohta, Tazro; Miura, Fumihito; Oki, Shinya

A workflow reproducibility scale for automatic validation of biological interpretation results

用于自动验证生物学解释结果的工作流程可重复性等级

Suetake, Hirotaka; Fukusato, Tsukasa; Igarashi, Takeo; Ohta, Tazro

Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows

通过自动化元数据验证和测试执行实现工作流共享,以提高已发布工作流的重用性。

Suetake, Hirotaka; Fukusato, Tsukasa; Igarashi, Takeo; Ohta, Tazro

TogoID: an exploratory ID converter to bridge biological datasets

TogoID:一个用于连接生物数据集的探索性ID转换器

Ikeda, Shuya; Ono, Hiromasa; Ohta, Tazro; Chiba, Hirokazu; Naito, Yuki; Moriya, Yuki; Kawashima, Shuichi; Yamamoto, Yasunori; Okamoto, Shinobu; Goto, Susumu; Katayama, Toshiaki