日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

The need to implement FAIR principles in biomolecular simulations

在生物分子模拟中实施 FAIR 原则的必要性

Amaro, Rommie E; Åqvist, Johan; Bahar, Ivet; Battistini, Federica; Bellaiche, Adam; Beltran, Daniel; Biggin, Philip C; Bonomi, Massimiliano; Bowman, Gregory R; Bryce, Richard A; Bussi, Giovanni; Carloni, Paolo; Case, David A; Cavalli, Andrea; Chang, Chia-En A; Cheatham, Thomas E 3rd; Cheung, Margaret S; Chipot, Christophe; Chong, Lillian T; Choudhary, Preeti; Cisneros, G Andres; Clementi, Cecilia; Collepardo-Guevara, Rosana; Coveney, Peter; Covino, Roberto; Crawford, T Daniel; Dal Peraro, Matteo; de Groot, Bert L; Delemotte, Lucie; De Vivo, Marco; Essex, Jonathan W; Fraternali, Franca; Gao, Jiali; Gelpí, Josep Ll; Gervasio, Francesco L; González-Nilo, Fernando D; Grubmüller, Helmut; Guenza, Marina G; Guzman, Horacio V; Harris, Sarah; Head-Gordon, Teresa; Hernandez, Rigoberto; Hospital, Adam; Huang, Niu; Huang, Xuhui; Hummer, Gerhard; Iglesias-Fernández, Javier; Jensen, Jan H; Jha, Shantenu; Jiao, Wanting; Jorgensen, William L; Kamerlin, Shina C L; Khalid, Syma; Laughton, Charles; Levitt, Michael; Limongelli, Vittorio; Lindahl, Erik; Lindorff-Larsen, Kresten; Loverde, Sharon; Lundborg, Magnus; Luo, Yun L; Luque, F Javier; Lynch, Charlotte I; MacKerell, Alexander D Jr; Magistrato, Alessandra; Marrink, Siewert J; Martin, Hugh; McCammon, J Andrew; Merz, Kenneth; Moliner, Vicent; Mulholland, Adrian J; Murad, Sohail; Naganathan, Athi N; Nangia, Shikha; Noe, Frank; Noy, Agnes; Oláh, Julianna; O'Mara, Megan L; Ondrechen, Mary Jo; Onuchic, Jose N; Onufriev, Alexey; Osuna, Sílvia; Palermo, Giulia; Panchenko, Anna R; Pantano, Sergio; Parish, Carol; Parrinello, Michele; Perez, Alberto; Perez-Acle, Tomas; Perilla, Juan R; Pettitt, B Montgomery; Pietropaolo, Adriana; Piquemal, Jean-Philip; Poma, Adolfo B; Praprotnik, Matej; Ramos, Maria J; Ren, Pengyu; Reuter, Nathalie; Roitberg, Adrian; Rosta, Edina; Rovira, Carme; Roux, Benoit; Rothlisberger, Ursula; Sanbonmatsu, Karissa Y; Schlick, Tamar; Shaytan, Alexey K; Simmerling, Carlos; Smith, Jeremy C; Sugita, Yuji; Świderek, Katarzyna; Taiji, Makoto; Tao, Peng; Tieleman, D Peter; Tikhonova, Irina G; Tirado-Rives, Julian; Tuñón, Iñaki; van der Kamp, Marc W; van der Spoel, David; Velankar, Sameer; Voth, Gregory A; Wade, Rebecca; Warshel, Ariel; Welborn, Valerie Vaissier; Wetmore, Stacey D; Wheeler, Travis J; Wong, Chung F; Yang, Lee-Wei; Zacharias, Martin; Orozco, Modesto

Potent Noncovalent Inhibitors of the Main Protease of SARS-CoV-2 from Molecular Sculpting of the Drug Perampanel Guided by Free Energy Perturbation Calculations

通过自由能微扰计算指导的药物吡仑帕奈分子结构修饰,开发出SARS-CoV-2主蛋白酶的强效非共价抑制剂

Zhang, Chun-Hui; Stone, Elizabeth A; Deshmukh, Maya; Ippolito, Joseph A; Ghahremanpour, Mohammad M; Tirado-Rives, Julian; Spasov, Krasimir A; Zhang, Shuo; Takeo, Yuka; Kudalkar, Shalley N; Liang, Zhuobin; Isaacs, Farren; Lindenbach, Brett; Miller, Scott J; Anderson, Karen S; Jorgensen, William L

Optimization of Triarylpyridinone Inhibitors of the Main Protease of SARS-CoV-2 to Low-Nanomolar Antiviral Potency

优化 SARS-CoV-2 主要蛋白酶的三芳基吡啶酮抑制剂,使其达到低纳摩尔抗病毒效力

Chun-Hui Zhang, Krasimir A Spasov, Raquel A Reilly, Klarissa Hollander, Elizabeth A Stone, Joseph A Ippolito, Maria-Elena Liosi, Maya G Deshmukh, Julian Tirado-Rives, Shuo Zhang, Zhuobin Liang, Scott J Miller, Farren Isaacs, Brett D Lindenbach, Karen S Anderson, William L Jorgensen

Explicit Representation of Cation-π Interactions in Force Fields with 1/r(4) Nonbonded Terms

具有 1/r(4) 非键项的力场中阳离子-π 相互作用的显式表示

Turupcu, Aysegul; Tirado-Rives, Julian; Jorgensen, William L

Development and Testing of the OPLS-AA/M Force Field for RNA

RNA OPLS-AA/M 力场的开发与测试

Robertson, Michael J; Qian, Yue; Robinson, Matthew C; Tirado-Rives, Julian; Jorgensen, William L

Robust Free Energy Perturbation Protocols for Creating Molecules in Solution

用于在溶液中生成分子的稳健自由能扰动方案

Cabeza de Vaca, Israel; Zarzuela, Ricardo; Tirado-Rives, Julian; Jorgensen, William L

Molecular Dynamics Simulations of a Conformationally Mobile Peptide-Based Catalyst for Atroposelective Bromination

利用分子动力学模拟研究构象可移动的肽基催化剂在对映选择性溴化反应中的应用

Yan, Xin Cindy; Metrano, Anthony J; Robertson, Michael J; Abascal, Nadia C; Tirado-Rives, Julian; Miller, Scott J; Jorgensen, William L

Enhanced Monte Carlo Methods for Modeling Proteins Including Computation of Absolute Free Energies of Binding

用于蛋白质建模的增强型蒙特卡罗方法,包括结合绝对自由能的计算

Cabeza de Vaca, Israel; Qian, Yue; Vilseck, Jonah Z; Tirado-Rives, Julian; Jorgensen, William L

Improved Treatment of Nucleosides and Nucleotides in the OPLS-AA Force Field

改进 OPLS-AA 力场中核苷和核苷酸的处理

Robertson, Michael J; Tirado-Rives, Julian; Jorgensen, William L

Biomolecular Force Field Parameterization via Atoms-in-Molecule Electron Density Partitioning

基于分子内原子电子密度划分的生物分子力场参数化

Cole, Daniel J; Vilseck, Jonah Z; Tirado-Rives, Julian; Payne, Mike C; Jorgensen, William L