日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

PDBe: enhanced structural data exploration to facilitate discovery

PDBe:增强结构数据探索以促进发现

Querino Lima Afonso, Marcelo; Pidruchna, Ivanna; Nair, Sreenath; Midlik, Adam; Lawal, Dare; Vollmar, Melanie; Appasamy, Sri Devan; Choudhary, Preeti; Kunnakkattu, Ibrahim Roshan; Bertoni, Damian; Escobar, Cristian A; Balasubramaniyan, Balakumaran; Gaborova, Romana; Leines, Grisell Díaz; Harrus, Deborah; Gupta, Deepti; Evans, Genevieve L; Paramval, Urmila; Magana, Paulyna; Tanweer, Ahsan; Todor, Mihai; Thorpe, Christopher J; Tsenkov, Maxim; Ganguly, Sudakshina; Ellaway, Joseph; Morellato Bueno, Weslley; Bellaiche, Adam; Sehnal, David; Svobodová, Radka; Fleming, Jennifer R; Velankar, Sameer

AlphaFold Protein Structure Database 2025: a redesigned interface and updated structural coverage

AlphaFold 蛋白质结构数据库 2025:重新设计的界面和更新的结构覆盖范围

Bertoni, Damian; Tsenkov, Maxim; Magana, Paulyna; Nair, Sreenath; Pidruchna, Ivanna; Querino Lima Afonso, Marcelo; Midlik, Adam; Paramval, Urmila; Lawal, Dare; Tanweer, Ahsan; Last, Meera; Patel, Risha; Laydon, Agata; Lasecki, Dariusz; Dietrich, Nick; Tomlinson, Hamish; Žídek, Augustin; Green, Tim; Kovalevskiy, Oleg; Lau, Andy; Kandathil, Shaun; Bordin, Nicola; Sillitoe, Ian; Mirdita, Milot; Jones, David; Orengo, Christine; Steinegger, Martin; Fleming, Jennifer R; Velankar, Sameer

Zinc-Mediated Loading and Release of His-Tagged Recombinant Proteins in Self-Assembling Peptide Coacervates

锌介导的组氨酸标签重组蛋白在自组装肽凝聚体中的装载和释放

Clegg, Benjamin; Reddy, Gayathri Aparnasai; Velankar, Ketki Y; Ostrowski, Sarah M; Liu, Wen; Fan, Yong; Gawalt, Ellen S; Meng, Wilson S

Associating protein residues in the literature with structural data

将文献中的蛋白质残基与结构数据关联起来

Vollmar, Melanie; Westrip, Simon; Nair, Sreenath; Balasubramaniyan, Balakumaran; Velankar, Sameer; Jones, Louise; Strickland, Peter

The need to implement FAIR principles in biomolecular simulations

在生物分子模拟中实施 FAIR 原则的必要性

Amaro, Rommie E; Åqvist, Johan; Bahar, Ivet; Battistini, Federica; Bellaiche, Adam; Beltran, Daniel; Biggin, Philip C; Bonomi, Massimiliano; Bowman, Gregory R; Bryce, Richard A; Bussi, Giovanni; Carloni, Paolo; Case, David A; Cavalli, Andrea; Chang, Chia-En A; Cheatham, Thomas E 3rd; Cheung, Margaret S; Chipot, Christophe; Chong, Lillian T; Choudhary, Preeti; Cisneros, G Andres; Clementi, Cecilia; Collepardo-Guevara, Rosana; Coveney, Peter; Covino, Roberto; Crawford, T Daniel; Dal Peraro, Matteo; de Groot, Bert L; Delemotte, Lucie; De Vivo, Marco; Essex, Jonathan W; Fraternali, Franca; Gao, Jiali; Gelpí, Josep Ll; Gervasio, Francesco L; González-Nilo, Fernando D; Grubmüller, Helmut; Guenza, Marina G; Guzman, Horacio V; Harris, Sarah; Head-Gordon, Teresa; Hernandez, Rigoberto; Hospital, Adam; Huang, Niu; Huang, Xuhui; Hummer, Gerhard; Iglesias-Fernández, Javier; Jensen, Jan H; Jha, Shantenu; Jiao, Wanting; Jorgensen, William L; Kamerlin, Shina C L; Khalid, Syma; Laughton, Charles; Levitt, Michael; Limongelli, Vittorio; Lindahl, Erik; Lindorff-Larsen, Kresten; Loverde, Sharon; Lundborg, Magnus; Luo, Yun L; Luque, F Javier; Lynch, Charlotte I; MacKerell, Alexander D Jr; Magistrato, Alessandra; Marrink, Siewert J; Martin, Hugh; McCammon, J Andrew; Merz, Kenneth; Moliner, Vicent; Mulholland, Adrian J; Murad, Sohail; Naganathan, Athi N; Nangia, Shikha; Noe, Frank; Noy, Agnes; Oláh, Julianna; O'Mara, Megan L; Ondrechen, Mary Jo; Onuchic, Jose N; Onufriev, Alexey; Osuna, Sílvia; Palermo, Giulia; Panchenko, Anna R; Pantano, Sergio; Parish, Carol; Parrinello, Michele; Perez, Alberto; Perez-Acle, Tomas; Perilla, Juan R; Pettitt, B Montgomery; Pietropaolo, Adriana; Piquemal, Jean-Philip; Poma, Adolfo B; Praprotnik, Matej; Ramos, Maria J; Ren, Pengyu; Reuter, Nathalie; Roitberg, Adrian; Rosta, Edina; Rovira, Carme; Roux, Benoit; Rothlisberger, Ursula; Sanbonmatsu, Karissa Y; Schlick, Tamar; Shaytan, Alexey K; Simmerling, Carlos; Smith, Jeremy C; Sugita, Yuji; Świderek, Katarzyna; Taiji, Makoto; Tao, Peng; Tieleman, D Peter; Tikhonova, Irina G; Tirado-Rives, Julian; Tuñón, Iñaki; van der Kamp, Marc W; van der Spoel, David; Velankar, Sameer; Voth, Gregory A; Wade, Rebecca; Warshel, Ariel; Welborn, Valerie Vaissier; Wetmore, Stacey D; Wheeler, Travis J; Wong, Chung F; Yang, Lee-Wei; Zacharias, Martin; Orozco, Modesto

MolViewSpec: a Mol* extension for describing and sharing molecular visualizations

MolViewSpec:用于描述和共享分子可视化的 Mol* 扩展

Midlik, Adam; Bittrich, Sebastian; Fleming, Jennifer R; Nair, Sreenath; Velankar, Sameer; Burley, Stephen K; Young, Jasmine Y; Vallat, Brinda; Sehnal, David

R2DT: a comprehensive platform for visualizing RNA secondary structure

R2DT:一个用于可视化RNA二级结构的综合平台

McCann, Holly; Meade, Caeden D; Williams, Loren Dean; Petrov, Anton S; Johnson, Philip Z; Simon, Anne E; Hoksza, David; Nawrocki, Eric P; Chan, Patricia P; Lowe, Todd M; Ribas, Carlos Eduardo; Sweeney, Blake A; Madeira, Fábio; Anyango, Stephen; Appasamy, Sri Devan; Deshpande, Mandar; Varadi, Mihaly; Velankar, Sameer; Zirbel, Craig L; Naiden, Aleksei; Jossinet, Fabrice; Petrov, Anton I

CATH v4.4: major expansion of CATH by experimental and predicted structural data

CATH v4.4:通过实验和预测的结构数据对 CATH 进行了重大扩展

Waman, Vaishali P; Bordin, Nicola; Lau, Andy; Kandathil, Shaun; Wells, Jude; Miller, David; Velankar, Sameer; Jones, David T; Sillitoe, Ian; Orengo, Christine

PDBe tools for an in-depth analysis of small molecules in the Protein Data Bank

PDBe 工具用于对蛋白质数据库中的小分子进行深入分析

Choudhary, Preeti; Kunnakkattu, Ibrahim Roshan; Nair, Sreenath; Lawal, Dare Kayode; Pidruchna, Ivanna; Afonso, Marcelo Querino Lima; Fleming, Jennifer R; Velankar, Sameer

PDB-IHM: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures

PDB-IHM:用于存储、管理、验证和传播集成结构的系统

Vallat, Brinda; Webb, Benjamin M; Zalevsky, Arthur; Tangmunarunkit, Hongsuda; Sekharan, Monica R; Voinea, Serban; Shafaeibejestan, Aref; Sagendorf, Jared; Hoch, Jeffrey C; Kurisu, Genji; Morris, Kyle L; Velankar, Sameer; Kesselman, Carl; Burley, Stephen K; Berman, Helen M; Sali, Andrej