日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Faecalibacterium prausnitzii, depleted in the Parkinson's disease microbiome, improves motor deficits in α-synuclein overexpressing mice.

帕金森病微生物组中减少的普拉梭菌(Faecalibacterium prausnitzii)可改善α-突触核蛋白过表达小鼠的运动缺陷。

Moiseyenko Anastasiya, Antonello Giacomo, Schonhoff Aubrey M, Boktor Joseph C, Long Kaelyn, Dirks Blake, Oguienko Anastasiya D, Winnett Alexander Viloria, Simpson Patrick, Daeizadeh Dorsa, Ismagilov Rustem F, Krajmalnik-Brown Rosa, Segata Nicola, Waldron Levi D, Mazmanian Sarkis K

Meta-analysis of 22,710 human microbiome metagenomes defines an oral-to-gut microbial enrichment score and associations with host health and disease

对 22,710 个人类微生物组宏基因组的荟萃分析定义了口腔到肠道微生物富集评分及其与宿主健康和疾病的关联。

Manghi, Paolo; Antonello, Giacomo; Schiffer, Lucas; Golzato, Davide; Wokaty, Andres; Beghini, Francesco; Mirzayi, Chloe; Long, Kaelyn; Gravel-Pucillo, Kai; Piccinno, Gianmarco; Gamboa-Tuz, Samuel David; Bonetti, Arianna; D'Amato, Giacomo; Azhar, Rimsha; Eckenrode, Kelly; Zohra, Fatima; Giunchiglia, Valentina; Keller, Marisa; Pedrotti, Anna; Likhotkin, Ilya; Elsafoury, Shaimaa; Geistlinger, Ludwig; Blanco-Miguez, Aitor; Thomas, Andrew Maltez; Zolfo, Moreno; Ramos, Marcel; Valles-Colomer, Mireia; Tamburini, Sabrina; Asnicar, Francesco; Jones, Heidi E; Huttenhower, Curtis; Carey, Vincent; Davis, Sean; Pasolli, Edoardo; Oh, Sehyun; Segata, Nicola; Waldron, Levi

Inferring the Timing of Antiretroviral Therapy by Zero-Inflated Random Change Point Models Using Longitudinal Data Subject to Left-Censoring

利用受左删失影响的纵向数据,通过零膨胀随机变化点模型推断抗逆转录病毒疗法的时机

Zhang, Hongbin; Robertson, McKaylee; Braunstein, Sarah L; Hanna, David B; Felsen, Uriel R; Waldron, Levi; Nash, Denis

Benchmarking large-scale single-cell RNA-seq analysis

大规模单细胞RNA测序分析的基准测试

Billato, Ilaria; Pages, Herve; Carey, Vince; Waldron, Levi; Sales, Gabriele; Romualdi, Chiara; Risso, Davide

Large-scale Manual Curation and Harmonization of Metadata from Metagenomic and Cancer Genomic Repositories: Challenges and Solutions

大规模手动整理和协调来自宏基因组和癌症基因组数据库的元数据:挑战与解决方案

Long, Kaelyn; Gravel-Pucillo, Kai; Waldron, Levi; Davis, Sean; Oh, Sehyun

Orchestrating Spatial Transcriptomics Analysis with Bioconductor

利用 Bioconductor 协调空间转录组学分析

Crowell, Helena L; Dong, Yixing; Billato, Ilaria; Cai, Peiying; Emons, Martin; Gunz, Samuel; Guo, Boyi; Li, Mengbo; Mahmoud, Alexandru; Manukyan, Artür; Pagès, Hervé; Panwar, Pratibha; Rao, Shreya; Sargeant, Callum J; Kern, Lori Shepherd; Ramos, Marcel; Sun, Jieran; Totty, Michael; Carey, Vincent J; Chen, Yunshun; Collado-Torres, Leonardo; Ghazanfar, Shila; Hansen, Kasper D; Martinowich, Keri; Maynard, Kristen R; Patrick, Ellis; Righelli, Dario; Risso, Davide; Tiberi, Simone; Waldron, Levi; Gottardo, Raphael; Robinson, Mark D; Hicks, Stephanie C; Weber, Lukas M

Machine learning for microbiologists

微生物学家的机器学习

Asnicar, Francesco; Thomas, Andrew Maltez; Passerini, Andrea; Waldron, Levi; Segata, Nicola

BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures

BugSigDB 捕捉了与宿主相关的多种微生物特征的差异丰度模式。

Geistlinger, Ludwig; Mirzayi, Chloe; Zohra, Fatima; Azhar, Rimsha; Elsafoury, Shaimaa; Grieve, Clare; Wokaty, Jennifer; Gamboa-Tuz, Samuel David; Sengupta, Pratyay; Hecht, Issac; Ravikrishnan, Aarthi; Gonçalves, Rafael S; Franzosa, Eric; Raman, Karthik; Carey, Vincent; Dowd, Jennifer B; Jones, Heidi E; Davis, Sean; Segata, Nicola; Huttenhower, Curtis; Waldron, Levi

Large-scale metagenomic analysis of oral microbiomes reveals markers for autism spectrum disorders

对口腔微生物组的大规模宏基因组分析揭示了自闭症谱系障碍的标志物

Manghi, Paolo; Filosi, Michele; Zolfo, Moreno; Casten, Lucas G; Garcia-Valiente, Albert; Mattevi, Stefania; Heidrich, Vitor; Golzato, Davide; Perini, Samuel; Thomas, Andrew M; Montalbano, Simone; Cancellieri, Samuele; Waldron, Levi; Hall, Jacob B; Xu, Simon; Volfovsky, Natalia; Green Snyder, LeeAnne; Feliciano, Pamela; Asnicar, Francesco; Valles-Colomer, Mireia; Michaelson, Jacob J; Segata, Nicola; Domenici, Enrico

Best practices to evaluate the impact of biomedical research software-metric collection beyond citations

评估生物医学研究软件影响的最佳实践——除引用次数之外的指标收集

Afiaz, Awan; Ivanov, Andrey A; Chamberlin, John; Hanauer, David; Savonen, Candace L; Goldman, Mary J; Morgan, Martin; Reich, Michael; Getka, Alexander; Holmes, Aaron; Pati, Sarthak; Knight, Dan; Boutros, Paul C; Bakas, Spyridon; Caporaso, J Gregory; Del Fiol, Guilherme; Hochheiser, Harry; Haas, Brian; Schloss, Patrick D; Eddy, James A; Albrecht, Jake; Fedorov, Andrey; Waldron, Levi; Hoffman, Ava M; Bradshaw, Richard L; Leek, Jeffrey T; Wright, Carrie