日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Fully Phased Telomere-to-Telomere Assemblies for Thoroughbred Horse and Donkey Haplotypes derived from a Mule Illuminate the Peculiar Evolution of Equid Centromeres

源自骡子的纯种马和驴单倍型的端粒到端粒组装的完全相位分析揭示了马科动物着丝粒的特殊进化

Li, Kai; Cappelletti, Eleonora; Dessaix, Carey; Ciosek, Julia; Robyn, Emily; Johnson, Lauren; AbouEl Ela, Nahla Hussien; Arias, Xiomara; Adelson, David L; Raudsepp, Terje; Piras, Francesca M; Laird-Smith, Melissa; Hudson, Elizabeth; Pickett, Brandon D; Koren, Sergey; Walenz, Brian P; Brooks, Shelise Y; Sison, Christina; Crawford, Juyun; Bouffard, Gerard; Phillippy, Adam M; Miller, Donald; Antczak, Douglas F; Cullen, Jonah; Stroupe, Sam; Davis, Brian; McCue, Molly; Durward-Akhurst, Sian; Petersen, Jessica L; Giulotto, Elena; Kalbfleisch, Ted

The formation and propagation of human Robertsonian chromosomes

人类罗伯逊染色体的形成和传播

de Lima, Leonardo Gomes; Guarracino, Andrea; Koren, Sergey; Potapova, Tamara; McKinney, Sean; Rhie, Arang; Solar, Steven J; Seidel, Chris; Fagen, Brandon L; Walenz, Brian P; Bouffard, Gerard G; Brooks, Shelise Y; Peterson, Michael; Hall, Kate; Crawford, Juyun; Young, Alice C; Pickett, Brandon D; Garrison, Erik; Phillippy, Adam M; Gerton, Jennifer L

Verkko2 integrates proximity-ligation data with long-read De Bruijn graphs for efficient telomere-to-telomere genome assembly, phasing, and scaffolding

Verkko2 将邻近连接数据与长读长 De Bruijn 图相结合,以实现高效的端粒到端粒基因组组装、定相和支架构建。

Antipov, Dmitry; Rautiainen, Mikko; Nurk, Sergey; Walenz, Brian P; Solar, Steven J; Phillippy, Adam M; Koren, Sergey

The complete sequence of a human Y chromosome

人类Y染色体的完整序列

Rhie, Arang; Nurk, Sergey; Cechova, Monika; Hoyt, Savannah J; Taylor, Dylan J; Altemose, Nicolas; Hook, Paul W; Koren, Sergey; Rautiainen, Mikko; Alexandrov, Ivan A; Allen, Jamie; Asri, Mobin; Bzikadze, Andrey V; Chen, Nae-Chyun; Chin, Chen-Shan; Diekhans, Mark; Flicek, Paul; Formenti, Giulio; Fungtammasan, Arkarachai; Garcia Giron, Carlos; Garrison, Erik; Gershman, Ariel; Gerton, Jennifer L; Grady, Patrick G S; Guarracino, Andrea; Haggerty, Leanne; Halabian, Reza; Hansen, Nancy F; Harris, Robert; Hartley, Gabrielle A; Harvey, William T; Haukness, Marina; Heinz, Jakob; Hourlier, Thibaut; Hubley, Robert M; Hunt, Sarah E; Hwang, Stephen; Jain, Miten; Kesharwani, Rupesh K; Lewis, Alexandra P; Li, Heng; Logsdon, Glennis A; Lucas, Julian K; Makalowski, Wojciech; Markovic, Christopher; Martin, Fergal J; Mc Cartney, Ann M; McCoy, Rajiv C; McDaniel, Jennifer; McNulty, Brandy M; Medvedev, Paul; Mikheenko, Alla; Munson, Katherine M; Murphy, Terence D; Olsen, Hugh E; Olson, Nathan D; Paulin, Luis F; Porubsky, David; Potapova, Tamara; Ryabov, Fedor; Salzberg, Steven L; Sauria, Michael E G; Sedlazeck, Fritz J; Shafin, Kishwar; Shepelev, Valery A; Shumate, Alaina; Storer, Jessica M; Surapaneni, Likhitha; Taravella Oill, Angela M; Thibaud-Nissen, Françoise; Timp, Winston; Tomaszkiewicz, Marta; Vollger, Mitchell R; Walenz, Brian P; Watwood, Allison C; Weissensteiner, Matthias H; Wenger, Aaron M; Wilson, Melissa A; Zarate, Samantha; Zhu, Yiming; Zook, Justin M; Eichler, Evan E; O'Neill, Rachel J; Schatz, Michael C; Miga, Karen H; Makova, Kateryna D; Phillippy, Adam M

Telomere-to-telomere assembly of diploid chromosomes with Verkko

利用Verkko进行二倍体染色体的端粒到端粒组装

Rautiainen, Mikko; Nurk, Sergey; Walenz, Brian P; Logsdon, Glennis A; Porubsky, David; Rhie, Arang; Eichler, Evan E; Phillippy, Adam M; Koren, Sergey

The complete sequence of a human genome

人类基因组的完整序列

Nurk, Sergey; Koren, Sergey; Rhie, Arang; Rautiainen, Mikko; Bzikadze, Andrey V; Mikheenko, Alla; Vollger, Mitchell R; Altemose, Nicolas; Uralsky, Lev; Gershman, Ariel; Aganezov, Sergey; Hoyt, Savannah J; Diekhans, Mark; Logsdon, Glennis A; Alonge, Michael; Antonarakis, Stylianos E; Borchers, Matthew; Bouffard, Gerard G; Brooks, Shelise Y; Caldas, Gina V; Chen, Nae-Chyun; Cheng, Haoyu; Chin, Chen-Shan; Chow, William; de Lima, Leonardo G; Dishuck, Philip C; Durbin, Richard; Dvorkina, Tatiana; Fiddes, Ian T; Formenti, Giulio; Fulton, Robert S; Fungtammasan, Arkarachai; Garrison, Erik; Grady, Patrick G S; Graves-Lindsay, Tina A; Hall, Ira M; Hansen, Nancy F; Hartley, Gabrielle A; Haukness, Marina; Howe, Kerstin; Hunkapiller, Michael W; Jain, Chirag; Jain, Miten; Jarvis, Erich D; Kerpedjiev, Peter; Kirsche, Melanie; Kolmogorov, Mikhail; Korlach, Jonas; Kremitzki, Milinn; Li, Heng; Maduro, Valerie V; Marschall, Tobias; McCartney, Ann M; McDaniel, Jennifer; Miller, Danny E; Mullikin, James C; Myers, Eugene W; Olson, Nathan D; Paten, Benedict; Peluso, Paul; Pevzner, Pavel A; Porubsky, David; Potapova, Tamara; Rogaev, Evgeny I; Rosenfeld, Jeffrey A; Salzberg, Steven L; Schneider, Valerie A; Sedlazeck, Fritz J; Shafin, Kishwar; Shew, Colin J; Shumate, Alaina; Sims, Ying; Smit, Arian F A; Soto, Daniela C; Sović, Ivan; Storer, Jessica M; Streets, Aaron; Sullivan, Beth A; Thibaud-Nissen, Françoise; Torrance, James; Wagner, Justin; Walenz, Brian P; Wenger, Aaron; Wood, Jonathan M D; Xiao, Chunlin; Yan, Stephanie M; Young, Alice C; Zarate, Samantha; Surti, Urvashi; McCoy, Rajiv C; Dennis, Megan Y; Alexandrov, Ivan A; Gerton, Jennifer L; O'Neill, Rachel J; Timp, Winston; Zook, Justin M; Schatz, Michael C; Eichler, Evan E; Miga, Karen H; Phillippy, Adam M

Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation

Merfin:通过k-mer验证改进变异过滤、组装评估和优化。

Formenti, Giulio; Rhie, Arang; Walenz, Brian P; Thibaud-Nissen, Françoise; Shafin, Kishwar; Koren, Sergey; Myers, Eugene W; Jarvis, Erich D; Phillippy, Adam M

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies

Merqury:无需参考序列即可评估基因组组装的质量、完整性和相位。

Rhie, Arang; Walenz, Brian P; Koren, Sergey; Phillippy, Adam M

Weighted minimizer sampling improves long read mapping

加权最小化采样可改善长读比对。

Jain, Chirag; Rhie, Arang; Zhang, Haowen; Chu, Claudia; Walenz, Brian P; Koren, Sergey; Phillippy, Adam M

Erratum: Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition

勘误:作者更正:改进后的家马参考基因组提高了组装的连续性和组成性。

Kalbfleisch, Theodore S; Rice, Edward S; DePriest, Michael S Jr; Walenz, Brian P; Hestand, Matthew S; Vermeesch, Joris R; O'Connell, Brendan L; Fiddes, Ian T; Vershinina, Alisa O; Saremi, Nedda F; Petersen, Jessica L; Finno, Carrie J; Bellone, Rebecca R; McCue, Molly E; Brooks, Samantha A; Bailey, Ernest; Orlando, Ludovic; Green, Richard E; Miller, Donald C; Antczak, Douglas F; MacLeod, James N