日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

RNA-Puzzles Round V: blind predictions of 23 RNA structures

RNA谜题第五轮:23种RNA结构的盲预测

Bu, Fan; Adam, Yagoub; Adamiak, Ryszard W; Antczak, Maciej; de Aquino, Belisa Rebeca H; Badepally, Nagendar Goud; Batey, Robert T; Baulin, Eugene F; Boinski, Pawel; Boniecki, Michal J; Bujnicki, Janusz M; Carpenter, Kristy A; Chacon, Jose; Chen, Shi-Jie; Chiu, Wah; Cordero, Pablo; Das, Naba Krishna; Das, Rhiju; Dawson, Wayne K; DiMaio, Frank; Ding, Feng; Dock-Bregeon, Anne-Catherine; Dokholyan, Nikolay V; Dror, Ron O; Dunin-Horkawicz, Stanisław; Eismann, Stephan; Ennifar, Eric; Esmaeeli, Reza; Farsani, Masoud Amiri; Ferré-D'Amaré, Adrian R; Geniesse, Caleb; Ghanim, George E; Guzman, Horacio V; Hood, Iris V; Huang, Lin; Jain, Dharm Skandh; Jaryani, Farhang; Jin, Lei; Joshi, Astha; Karelina, Masha; Kieft, Jeffrey S; Kladwang, Wipapat; Kmiecik, Sebastian; Koirala, Deepak; Kollmann, Markus; Kretsch, Rachael C; Kurciński, Mateusz; Li, Jun; Li, Shuang; Magnus, Marcin; Masquida, BenoÎt; Moafinejad, S Naeim; Mondal, Arup; Mukherjee, Sunandan; Nguyen, Thi Hoang Duong; Nikolaev, Grigory; Nithin, Chandran; Nye, Grace; Pandaranadar Jeyeram, Iswarya P N; Perez, Alberto; Pham, Phillip; Piccirilli, Joseph A; Pilla, Smita Priyadarshini; Pluta, Radosław; Poblete, Simón; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Popenda, Lukasz; Pucci, Fabrizio; Rangan, Ramya; Ray, Angana; Ren, Aiming; Sarzynska, Joanna; Sha, Congzhou Mike; Stefaniak, Filip; Su, Zhaoming; Suddala, Krishna C; Szachniuk, Marta; Townshend, Raphael; Trachman, Robert J 3rd; Wang, Jian; Wang, Wenkai; Watkins, Andrew; Wirecki, Tomasz K; Xiao, Yi; Xiong, Peng; Xiong, Yiduo; Yang, Jianyi; Yesselman, Joseph David; Zhang, Jinwei; Zhang, Yi; Zhang, Zhenzhen; Zhou, Yuanzhe; Zok, Tomasz; Zhang, Dong; Zhang, Sicheng; Żyła, Adriana; Westhof, Eric; Miao, Zhichao

DesiRNA: structure-based design of RNA sequences with a replica exchange Monte Carlo approach

DesiRNA:基于结构的RNA序列设计及副本交换蒙特卡罗方法

Wirecki, Tomasz K; Lach, Grzegorz; Badepally, Nagendar Goud; Moafinejad, S Naeim; Jaryani, Farhang; Klaudel, Gaja; Nec, Kalina; Baulin, Eugene F; Bujnicki, Janusz M

SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories

SimRNAweb v2.0:一个用于RNA折叠模拟和3D结构建模的Web服务器,具有可选约束和增强的折叠轨迹分析功能。

Moafinejad, S Naeim; de Aquino, Belisa R H; Boniecki, Michał J; Pandaranadar Jeyeram, Iswarya P N; Nikolaev, Grigory; Magnus, Marcin; Farsani, Masoud Amiri; Badepally, Nagendar Goud; Wirecki, Tomasz K; Stefaniak, Filip; Bujnicki, Janusz M

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models

用于 SARS-CoV-2 UTR 模型的无参考 RNA 三维结构比较分析的计算流程

Gumna, Julita; Antczak, Maciej; Adamiak, Ryszard W; Bujnicki, Janusz M; Chen, Shi-Jie; Ding, Feng; Ghosh, Pritha; Li, Jun; Mukherjee, Sunandan; Nithin, Chandran; Pachulska-Wieczorek, Katarzyna; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Sarzynska, Joanna; Wirecki, Tomasz; Zhang, Dong; Zhang, Sicheng; Zok, Tomasz; Westhof, Eric; Miao, Zhichao; Szachniuk, Marta; Rybarczyk, Agnieszka

Repetitive transcranial magnetic stimulation for smoking cessation: a pivotal multicenter double-blind randomized controlled trial

重复经颅磁刺激治疗戒烟:一项关键的多中心双盲随机对照试验

Zangen, Abraham; Moshe, Hagar; Martinez, Diana; Barnea-Ygael, Noam; Vapnik, Tanya; Bystritsky, Alexander; Duffy, Walter; Toder, Doron; Casuto, Leah; Grosz, Moran Lipkinsky; Nunes, Edward V; Ward, Herbert; Tendler, Aron; Feifel, David; Morales, Oscar; Roth, Yiftach; Iosifescu, Dan V; Winston, Jaron; Wirecki, Theodore; Stein, Ahava; Deutsch, Frederic; Li, Xingbao; George, Mark S

Genome-wide mapping of SARS-CoV-2 RNA structures identifies therapeutically-relevant elements

对SARS-CoV-2 RNA结构进行全基因组定位,鉴定出具有治疗意义的元件

Ilaria Manfredonia,Chandran Nithin,Almudena Ponce-Salvatierra,Pritha Ghosh,Tomasz K Wirecki,Tycho Marinus,Natacha S Ogando,Eric J Snijder,Martijn J van Hemert,Janusz M Bujnicki,Danny Incarnato

RNAProbe: a web server for normalization and analysis of RNA structure probing data

RNAProbe:一个用于RNA结构探测数据标准化和分析的Web服务器

Wirecki, Tomasz K; Merdas, Katarzyna; Bernat, Agata; Boniecki, Michał J; Bujnicki, Janusz M; Stefaniak, Filip

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information

RNArchitecture:一个RNA家族数据库和分类系统,重点关注结构信息。

Boccaletto, Pietro; Magnus, Marcin; Almeida, Catarina; Zyla, Adriana; Astha, Astha; Pluta, Radoslaw; Baginski, Blazej; Jankowska, Elzbieta; Dunin-Horkawicz, Stanislaw; Wirecki, Tomasz K; Boniecki, Michal J; Stefaniak, Filip; Bujnicki, Janusz M

MODOMICS: a database of RNA modification pathways. 2017 update

MODOMICS:RNA修饰通路数据库。2017年更新

Boccaletto, Pietro; Machnicka, Magdalena A; Purta, Elzbieta; Piatkowski, Pawel; Baginski, Blazej; Wirecki, Tomasz K; de Crécy-Lagard, Valérie; Ross, Robert; Limbach, Patrick A; Kotter, Annika; Helm, Mark; Bujnicki, Janusz M

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

对 WeFold 蛋白质结构预测协作项目及其在 CASP11 和 CASP12 中的流程进行分析和评估

Keasar, Chen; McGuffin, Liam J; Wallner, Björn; Chopra, Gaurav; Adhikari, Badri; Bhattacharya, Debswapna; Blake, Lauren; Bortot, Leandro Oliveira; Cao, Renzhi; Dhanasekaran, B K; Dimas, Itzhel; Faccioli, Rodrigo Antonio; Faraggi, Eshel; Ganzynkowicz, Robert; Ghosh, Sambit; Ghosh, Soma; Giełdoń, Artur; Golon, Lukasz; He, Yi; Heo, Lim; Hou, Jie; Khan, Main; Khatib, Firas; Khoury, George A; Kieslich, Chris; Kim, David E; Krupa, Pawel; Lee, Gyu Rie; Li, Hongbo; Li, Jilong; Lipska, Agnieszka; Liwo, Adam; Maghrabi, Ali Hassan A; Mirdita, Milot; Mirzaei, Shokoufeh; Mozolewska, Magdalena A; Onel, Melis; Ovchinnikov, Sergey; Shah, Anand; Shah, Utkarsh; Sidi, Tomer; Sieradzan, Adam K; Ślusarz, Magdalena; Ślusarz, Rafal; Smadbeck, James; Tamamis, Phanourios; Trieber, Nicholas; Wirecki, Tomasz; Yin, Yanping; Zhang, Yang; Bacardit, Jaume; Baranowski, Maciej; Chapman, Nicholas; Cooper, Seth; Defelicibus, Alexandre; Flatten, Jeff; Koepnick, Brian; Popović, Zoran; Zaborowski, Bartlomiej; Baker, David; Cheng, Jianlin; Czaplewski, Cezary; Delbem, Alexandre Cláudio Botazzo; Floudas, Christodoulos; Kloczkowski, Andrzej; Ołdziej, Stanislaw; Levitt, Michael; Scheraga, Harold; Seok, Chaok; Söding, Johannes; Vishveshwara, Saraswathi; Xu, Dong; Crivelli, Silvia N