日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Systematic cell-type resolved transcriptomes of 8 tissues in 8 lab and wild-derived mouse strains capture global and local expression variation

对8个实验室和野生小鼠品系的8种组织进行系统性的细胞类型解析转录组分析,揭示了整体和局部表达变异。

Rebboah, Elisabeth; Weber, Ryan; Abdollahzadeh, Elnaz; Swarna, Nikhila; Sullivan, Delaney K; Trout, Diane; Reese, Fairlie; Liang, Heidi Yahan; Filimban, Ghassan; Mahdipoor, Parvin; Duffield, Margaret; Mojaverzargar, Romina; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Zhang, Haoran; Loving, Rebekah K; Carilli, Maria; Booeshaghi, A Sina; Kawauchi, Shimako; Hallgrímsdóttir, Ingileif B; Williams, Brian A; MacGregor, Grant R; Pachter, Lior; Wold, Barbara J; Mortazavi, Ali

Hybrid crosses reveal a cell-type-specific landscape of mouse regulatory variation

杂交实验揭示了小鼠调控变异的细胞类型特异性图谱

Weber, Ryan; Carilli, Maria; Rebboah, Elisabeth; Filimban, Ghassan; Liang, Heidi Yahan; Trout, Diane; Duffield, Margaret; Mahdipoor, Parvin; Taghizadeh, Erisa; Fattahi, Negar; Mojgani, Negar; Mojaverzargar, Romina; Kawauchi, Shimako; Williams, Brian A; MacGregor, Grant R; Wold, Barbara J; Pachter, Lior; Hallgrimsdottir, Ingileif B; Mortazavi, Ali

Long-read sequencing transcriptome quantification with lr-kallisto

利用 lr-kallisto 进行长读长测序转录组定量分析

Loving, Rebekah K; Sullivan, Delaney K; Booeshagi, A Sina; Reese, Fairlie; Rebboah, Elisabeth; Sakr, Jasmine; Rezaie, Narges; Liang, Heidi Y; Filimban, Ghassan; Kawauchi, Shimako; Oakes, Conrad; Trout, Diane; Williams, Brian A; MacGregor, Grant; Wold, Barbara J; Mortazavi, Ali; Pachter, Lior

Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

对用于转录本鉴定和定量的长读长RNA测序方法进行系统评估

Pardo-Palacios, Francisco J; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Sílvia; Williams, Brian; Loveland, Jane E; De María, Maite; Adams, Matthew S; Balderrama-Gutierrez, Gabriela; Behera, Amit K; Gonzalez Martinez, Jose M; Hunt, Toby; Lagarde, Julien; Liang, Cindy E; Li, Haoran; Meade, Marcus Jerryd; Moraga Amador, David A; Prjibelski, Andrey D; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M; Çelik, Muhammed Hasan; Chen, Ying; Du, Mei R M; Felton, Colette; Göke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E; Sim, Andre D; Tang, Alison D; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y; Yang, Chen; Barnes, If; Berry, Andrew E; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M; Ferrández-Peral, Luis; Garcia-Reyero, Natàlia; Götz, Stefan; Hernández-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomás, Jorge; Mudge, Jonathan M; Panayotova, Nedka G; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A; Carninci, Piero; Denslow, Nancy D; Guigó, Roderic; Hunter, Margaret E; Maehr, Rene; Shen, Yin; Tilgner, Hagen U; Wold, Barbara J; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N

Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells

HepG2细胞中人类转录因子功能和基因调控模式的表征

Moyers, Belle A; Partridge, E Christopher; Mackiewicz, Mark; Betti, Michael J; Darji, Roshan; Meadows, Sarah K; Newberry, Kimberly M; Brandsmeier, Laurel A; Wold, Barbara J; Mendenhall, Eric M; Myers, Richard M

The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity

ENCODE4长读长RNA测序数据集揭示了转录本结构多样性的不同类别

Reese, Fairlie; Williams, Brian; Balderrama-Gutierrez, Gabriela; Wyman, Dana; Çelik, Muhammed Hasan; Rebboah, Elisabeth; Rezaie, Narges; Trout, Diane; Razavi-Mohseni, Milad; Jiang, Yunzhe; Borsari, Beatrice; Morabito, Samuel; Liang, Heidi Yahan; McGill, Cassandra J; Rahmanian, Sorena; Sakr, Jasmine; Jiang, Shan; Zeng, Weihua; Carvalho, Klebea; Weimer, Annika K; Dionne, Louise A; McShane, Ariel; Bedi, Karan; Elhajjajy, Shaimae I; Upchurch, Sean; Jou, Jennifer; Youngworth, Ingrid; Gabdank, Idan; Sud, Paul; Jolanki, Otto; Strattan, J Seth; Kagda, Meenakshi S; Snyder, Michael P; Hitz, Ben C; Moore, Jill E; Weng, Zhiping; Bennett, David; Reinholdt, Laura; Ljungman, Mats; Beer, Michael A; Gerstein, Mark B; Pachter, Lior; Guigó, Roderic; Wold, Barbara J; Mortazavi, Ali

RNAget: an API to securely retrieve RNA quantifications

RNAget:一个用于安全检索RNA定量结果的API

Upchurch, Sean; Palumbo, Emilio; Adams, Jeremy; Bujold, David; Bourque, Guillaume; Nedzel, Jared; Graham, Keenan; Kagda, Meenakshi S; Assis, Pedro; Hitz, Benjamin; Righi, Emilio; Guigó, Roderic; Wold, Barbara J

GA4GH: International policies and standards for data sharing across genomic research and healthcare

GA4GH:基因组研究和医疗保健领域数据共享的国际政策和标准

Rehm, Heidi L; Page, Angela J H; Smith, Lindsay; Adams, Jeremy B; Alterovitz, Gil; Babb, Lawrence J; Barkley, Maxmillian P; Baudis, Michael; Beauvais, Michael J S; Beck, Tim; Beckmann, Jacques S; Beltran, Sergi; Bernick, David; Bernier, Alexander; Bonfield, James K; Boughtwood, Tiffany F; Bourque, Guillaume; Bowers, Sarion R; Brookes, Anthony J; Brudno, Michael; Brush, Matthew H; Bujold, David; Burdett, Tony; Buske, Orion J; Cabili, Moran N; Cameron, Daniel L; Carroll, Robert J; Casas-Silva, Esmeralda; Chakravarty, Debyani; Chaudhari, Bimal P; Chen, Shu Hui; Cherry, J Michael; Chung, Justina; Cline, Melissa; Clissold, Hayley L; Cook-Deegan, Robert M; Courtot, Mélanie; Cunningham, Fiona; Cupak, Miro; Davies, Robert M; Denisko, Danielle; Doerr, Megan J; Dolman, Lena I; Dove, Edward S; Dursi, L Jonathan; Dyke, Stephanie O M; Eddy, James A; Eilbeck, Karen; Ellrott, Kyle P; Fairley, Susan; Fakhro, Khalid A; Firth, Helen V; Fitzsimons, Michael S; Fiume, Marc; Flicek, Paul; Fore, Ian M; Freeberg, Mallory A; Freimuth, Robert R; Fromont, Lauren A; Fuerth, Jonathan; Gaff, Clara L; Gan, Weiniu; Ghanaim, Elena M; Glazer, David; Green, Robert C; Griffith, Malachi; Griffith, Obi L; Grossman, Robert L; Groza, Tudor; Guidry Auvil, Jaime M; Guigó, Roderic; Gupta, Dipayan; Haendel, Melissa A; Hamosh, Ada; Hansen, David P; Hart, Reece K; Hartley, Dean Mitchell; Haussler, David; Hendricks-Sturrup, Rachele M; Ho, Calvin W L; Hobb, Ashley E; Hoffman, Michael M; Hofmann, Oliver M; Holub, Petr; Hsu, Jacob Shujui; Hubaux, Jean-Pierre; Hunt, Sarah E; Husami, Ammar; Jacobsen, Julius O; Jamuar, Saumya S; Janes, Elizabeth L; Jeanson, Francis; Jené, Aina; Johns, Amber L; Joly, Yann; Jones, Steven J M; Kanitz, Alexander; Kato, Kazuto; Keane, Thomas M; Kekesi-Lafrance, Kristina; Kelleher, Jerome; Kerry, Giselle; Khor, Seik-Soon; Knoppers, Bartha M; Konopko, Melissa A; Kosaki, Kenjiro; Kuba, Martin; Lawson, Jonathan; Leinonen, Rasko; Li, Stephanie; Lin, Michael F; Linden, Mikael; Liu, Xianglin; Udara Liyanage, Isuru; Lopez, Javier; Lucassen, Anneke M; Lukowski, Michael; Mann, Alice L; Marshall, John; Mattioni, Michele; Metke-Jimenez, Alejandro; Middleton, Anna; Milne, Richard J; Molnár-Gábor, Fruzsina; Mulder, Nicola; Munoz-Torres, Monica C; Nag, Rishi; Nakagawa, Hidewaki; Nasir, Jamal; Navarro, Arcadi; Nelson, Tristan H; Niewielska, Ania; Nisselle, Amy; Niu, Jeffrey; Nyrönen, Tommi H; O'Connor, Brian D; Oesterle, Sabine; Ogishima, Soichi; Wang, Vivian Ota; Paglione, Laura A D; Palumbo, Emilio; Parkinson, Helen E; Philippakis, Anthony A; Pizarro, Angel D; Prlic, Andreas; Rambla, Jordi; Rendon, Augusto; Rider, Renee A; Robinson, Peter N; Rodarmer, Kurt W; Rodriguez, Laura Lyman; Rubin, Alan F; Rueda, Manuel; Rushton, Gregory A; Ryan, Rosalyn S; Saunders, Gary I; Schuilenburg, Helen; Schwede, Torsten; Scollen, Serena; Senf, Alexander; Sheffield, Nathan C; Skantharajah, Neerjah; Smith, Albert V; Sofia, Heidi J; Spalding, Dylan; Spurdle, Amanda B; Stark, Zornitza; Stein, Lincoln D; Suematsu, Makoto; Tan, Patrick; Tedds, Jonathan A; Thomson, Alastair A; Thorogood, Adrian; Tickle, Timothy L; Tokunaga, Katsushi; Törnroos, Juha; Torrents, David; Upchurch, Sean; Valencia, Alfonso; Guimera, Roman Valls; Vamathevan, Jessica; Varma, Susheel; Vears, Danya F; Viner, Coby; Voisin, Craig; Wagner, Alex H; Wallace, Susan E; Walsh, Brian P; Williams, Marc S; Winkler, Eva C; Wold, Barbara J; Wood, Grant M; Woolley, J Patrick; Yamasaki, Chisato; Yates, Andrew D; Yung, Christina K; Zass, Lyndon J; Zaytseva, Ksenia; Zhang, Junjun; Goodhand, Peter; North, Kathryn; Birney, Ewan

Reconstructing a metazoan genetic pathway with transcriptome-wide epistasis measurements

利用转录组上位性测量重建后生动物遗传通路

Angeles-Albores, David; Puckett Robinson, Carmie; Williams, Brian A; Wold, Barbara J; Sternberg, Paul W

Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified

将高通量测序数据映射到重复序列的陷阱:Piwi 的基因组靶标仍未确定

Marinov, Georgi K; Wang, Jie; Handler, Dominik; Wold, Barbara J; Weng, Zhiping; Hannon, Gregory J; Aravin, Alexei A; Zamore, Phillip D; Brennecke, Julius; Toth, Katalin Fejes