日期:
2020 年 — 2026 年
2020
2021
2022
2023
2024
2025
2026
影响因子:

Mining antibody functionality via AI-guided structural landscape profiling

利用人工智能引导的结构景观分析挖掘抗体功能

Terekhov, Stanislav S; Ivanisenko, Nikita V; Zhang, Nan; Mokrushina, Yuliana A; Nolde, Dmitry E; Lomakin, Yakov A; Zalevsky, Arthur; Ovchinnikova, Leyla A; Malabuiok, Diana M; Baranova, Margarita N; Shashkova, Tatiana; Aliper, Elena; Zhang, Mingxiu; Guo, Kun; Duga, Sergey; Akhmetyanov, Nikolay; Mamontov, Stepan; Smirnova, Anastasia O; Mamedov, Ilgar; Bobik, Tatiana V; Kostin, Nikita N; Chernov, Aleksandr S; Eliseev, Igor E; Yaroshevich, Igor; Boitsov, Vitali M; Stepanov, Alexey V; Zhang, Ding; Efremov, Roman G; Smirnov, Ivan V; Kardymon, Olga; Zhang, Hongkai; Guo, Yu; Lerner, Richard; Gabibov, Alexander G; Kornberg, Roger D

RCSB Protein Data Bank: Delivering integrative structures alongside experimental structures and computed structure models

RCSB蛋白质数据库:提供整合结构,包括实验结构和计算结构模型。

Vallat, Brinda; Rose, Yana; Piehl, Dennis W; Duarte, Jose M; Bittrich, Sebastian; Bi, Chunxiao; Segura, Joan; Zalevsky, Arthur; Sekharan, Monica R; Webb, Benjamin M; Bhikadiya, Charmi; Voigt, Maria; Henry, Jeremy; Chao, Henry; Pingale, Aditya; Raymond, David; Sagendorf, Jared; Peisach, Ezra; Feng, Zukang; Guranovic, Vladimir; Smith, James; Rose, Alexander S; Young, Jasmine Y; Berman, Helen M; Sali, Andrej; Burley, Stephen K

Updated resources for exploring experimentally-determined PDB structures and Computed Structure Models at the RCSB Protein Data Bank

RCSB蛋白质数据库中用于探索实验确定的PDB结构和计算结构模型的最新资源

Burley, Stephen K; Bhatt, Rusham; Bhikadiya, Charmi; Bi, Chunxiao; Biester, Alison; Biswas, Pratyoy; Bittrich, Sebastian; Blaumann, Santiago; Brown, Ronald; Chao, Henry; Chithari, Vivek Reddy; Craig, Paul A; Crichlow, Gregg V; Duarte, Jose M; Dutta, Shuchismita; Feng, Zukang; Flatt, Justin W; Ghosh, Sutapa; Goodsell, David S; Green, Rachel Kramer; Guranovic, Vladimir; Henry, Jeremy; Hudson, Brian P; Joy, Michael; Kaelber, Jason T; Khokhriakov, Igor; Lai, Jhih-Siang; Lawson, Catherine L; Liang, Yuhe; Myers-Turnbull, Douglas; Peisach, Ezra; Persikova, Irina; Piehl, Dennis W; Pingale, Aditya; Rose, Yana; Sagendorf, Jared; Sali, Andrej; Segura, Joan; Sekharan, Monica; Shao, Chenghua; Smith, James; Trumbull, Michael; Vallat, Brinda; Voigt, Maria; Webb, Ben; Whetstone, Shamara; Wu-Wu, Amy; Xing, Tongji; Young, Jasmine Y; Zalevsky, Arthur; Zardecki, Christine

AlphaCross-XL: A Seamless Tool for Automated and Proteome-Scale Mapping of Cross-Linked Peptides Onto 3D Protein Structures

AlphaCross-XL:一种用于将交联肽自动映射到三维蛋白质结构上的无缝工具,其规模可达蛋白质组级别

Shenoy, Sanjyot Vinayak; Biswas, Deeptarup; Zalevsky, Arthur; Kishishita, Audrey; Verma, Ayushi; Upadhay, Ishan; He, Yi; Sali, Andrej; Viner, Rosa; Mandal, Kamal; Srivastava, Sanjeeva; Wiita, Arun P

IHMValidation: Assessment of Integrative Structure Models Deposited to the Protein Data Bank

IHM验证:对存入蛋白质数据库的整合结构模型进行评估

Zalevsky, Arthur O; Vallat, Brinda; Webb, Benjamin M; Tangmunarunkit, Hongsuda; Sekharan, Monica R; Shafaeibejestan, Aref; Ganesan, Sai; Sagendorf, Jared; Jeffries, Cy M; Trewhella, Jill; Graziadei, Andrea; Vizcaíno, Juan Antonio; Leitner, Alexander; Rappsilber, Juri; Peisach, Ezra; Flatt, Justin W; Young, Jasmine Y; Majila, Kartik; Viswanath, Shruthi; Kesselman, Carl; Hoch, Jeffrey C; Kurisu, Genji; Morris, Kyle L; Velankar, Sameer; Berman, Helen M; Burley, Stephen K; Sali, Andrej

PDB-IHM: A System for Deposition, Curation, Validation, and Dissemination of Integrative Structures

PDB-IHM:用于存储、管理、验证和传播集成结构的系统

Vallat, Brinda; Webb, Benjamin M; Zalevsky, Arthur; Tangmunarunkit, Hongsuda; Sekharan, Monica R; Voinea, Serban; Shafaeibejestan, Aref; Sagendorf, Jared; Hoch, Jeffrey C; Kurisu, Genji; Morris, Kyle L; Velankar, Sameer; Kesselman, Carl; Burley, Stephen K; Berman, Helen M; Sali, Andrej

Structures, functions and adaptations of the human LINE-1 ORF2 protein

人类LINE-1 ORF2蛋白的结构、功能和适应性

Baldwin, Eric T; van Eeuwen, Trevor; Hoyos, David; Zalevsky, Arthur; Tchesnokov, Egor P; Sánchez, Roberto; Miller, Bryant D; Di Stefano, Luciano H; Ruiz, Francesc Xavier; Hancock, Matthew; Işik, Esin; Mendez-Dorantes, Carlos; Walpole, Thomas; Nichols, Charles; Wan, Paul; Riento, Kirsi; Halls-Kass, Rowan; Augustin, Martin; Lammens, Alfred; Jestel, Anja; Upla, Paula; Xibinaku, Kera; Congreve, Samantha; Hennink, Maximiliaan; Rogala, Kacper B; Schneider, Anna M; Fairman, Jennifer E; Christensen, Shawn M; Desrosiers, Brian; Bisacchi, Gregory S; Saunders, Oliver L; Hafeez, Nafeeza; Miao, Wenyan; Kapeller, Rosana; Zaller, Dennis M; Sali, Andrej; Weichenrieder, Oliver; Burns, Kathleen H; Götte, Matthias; Rout, Michael P; Arnold, Eddy; Greenbaum, Benjamin D; Romero, Donna L; LaCava, John; Taylor, Martin S

IHMCIF: An Extension of the PDBx/mmCIF Data Standard for Integrative Structure Determination Methods

IHMCIF:PDBx/mmCIF 数据标准的扩展,用于整合结构测定方法

Vallat, Brinda; Webb, Benjamin M; Westbrook, John D; Goddard, Thomas D; Hanke, Christian A; Graziadei, Andrea; Peisach, Ezra; Zalevsky, Arthur; Sagendorf, Jared; Tangmunarunkit, Hongsuda; Voinea, Serban; Sekharan, Monica; Yu, Jian; Bonvin, Alexander A M J J; DiMaio, Frank; Hummer, Gerhard; Meiler, Jens; Tajkhorshid, Emad; Ferrin, Thomas E; Lawson, Catherine L; Leitner, Alexander; Rappsilber, Juri; Seidel, Claus A M; Jeffries, Cy M; Burley, Stephen K; Hoch, Jeffrey C; Kurisu, Genji; Morris, Kyle; Patwardhan, Ardan; Velankar, Sameer; Schwede, Torsten; Trewhella, Jill; Kesselman, Carl; Berman, Helen M; Sali, Andrej

RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning

RCSB蛋白质数据库(RCSB.org):提供实验确定的PDB结构以及一百万个由人工智能/机器学习计算得到的蛋白质结构模型。

Burley, Stephen K; Bhikadiya, Charmi; Bi, Chunxiao; Bittrich, Sebastian; Chao, Henry; Chen, Li; Craig, Paul A; Crichlow, Gregg V; Dalenberg, Kenneth; Duarte, Jose M; Dutta, Shuchismita; Fayazi, Maryam; Feng, Zukang; Flatt, Justin W; Ganesan, Sai; Ghosh, Sutapa; Goodsell, David S; Green, Rachel Kramer; Guranovic, Vladimir; Henry, Jeremy; Hudson, Brian P; Khokhriakov, Igor; Lawson, Catherine L; Liang, Yuhe; Lowe, Robert; Peisach, Ezra; Persikova, Irina; Piehl, Dennis W; Rose, Yana; Sali, Andrej; Segura, Joan; Sekharan, Monica; Shao, Chenghua; Vallat, Brinda; Voigt, Maria; Webb, Ben; Westbrook, John D; Whetstone, Shamara; Young, Jasmine Y; Zalevsky, Arthur; Zardecki, Christine

Protein Design: From the Aspect of Water Solubility and Stability

蛋白质设计:从水溶性和稳定性角度出发

Qing, Rui; Hao, Shilei; Smorodina, Eva; Jin, David; Zalevsky, Arthur; Zhang, Shuguang